LGRPv2

Gene search

Sequence information

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Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Viun9g03949	ATGCAACACGTTATAACGGGAATTGAAGCAATGCGAAAGGCGATCTCCTTTCTCGTTCAACCGCGATGCCTCCTTCTCGTCATTGTTTTCACAATTTTCTTGATTCTCGCAATATCTGGTTCTAGACGGGTTGAAGAAAAAGTAGAAGAAGAGCCTGAAATTACAGACAGAGTATTCTTGGATGTTGATATTGATGGACAACGTCTAGGTAGGATTGTCATTGGATTATATGGCCAAGTTGTACCGAAAACTGTGGAAAATTTTAGAGCTTTGTGCACAGGGGAAAAAGGAAAGAATGCCAATGGTGTAAAACTTCACTACAAAGGAACACCATTTCATAGGATAATATCAGGTTTCATGTTTCAGGGTGGTGACATTGTCCACCGTGATGGTAAAGGATATGAATCTATTTATGGTGGTACCTTTCCTGATGAAAATTTCAAGATAAAACATTCACATGCGGGTATAGTCTCTATGGTGAATTCAGGTCCTGATTCCAATGGGTCACAGTTTTTTATTACCACAGTGAAGACCGGTTGGTTAGATGGAGAACATGTTGTGTTTGGGAAGGTTGTCCAAGGCATGGATACTGTGTTTGCAATTGAAGGGGGTGCTGGAACCTACAATGGTAAACCCAGAAAGAAAGTAGTAATTGCAGATTCTGGACTCTGGAAAGATACCCAAGAGTCTGTGAGATGA	699	0.4077	MQHVITGIEAMRKAISFLVQPRCLLLVIVFTIFLILAISGSRRVEEKVEEEPEITDRVFLDVDIDGQRLGRIVIGLYGQVVPKTVENFRALCTGEKGKNANGVKLHYKGTPFHRIISGFMFQGGDIVHRDGKGYESIYGGTFPDENFKIKHSHAGIVSMVNSGPDSNGSQFFITTVKTGWLDGEHVVFGKVVQGMDTVFAIEGGAGTYNGKPRKKVVIADSGLWKDTQESVR	232

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Annotation information

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Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Viun9g03949	232	Gene3D	-	44	231	IPR029000	-
	Viun9g03949	232	ProSiteProfiles	Cyclophilin-type peptidyl-prolyl cis-trans isomerase domain profile.	59	223	IPR002130	GO:0000413\|GO:0003755
	Viun9g03949	232	FunFam	Peptidyl-prolyl cis-trans isomerase	44	229	-	-
	Viun9g03949	232	PRINTS	Cyclophilin peptidyl-prolyl cis-trans isomerase signature	155	170	IPR002130	GO:0000413\|GO:0003755
	Viun9g03949	232	PRINTS	Cyclophilin peptidyl-prolyl cis-trans isomerase signature	170	182	IPR002130	GO:0000413\|GO:0003755
	Viun9g03949	232	PRINTS	Cyclophilin peptidyl-prolyl cis-trans isomerase signature	76	91	IPR002130	GO:0000413\|GO:0003755
	Viun9g03949	232	PRINTS	Cyclophilin peptidyl-prolyl cis-trans isomerase signature	183	198	IPR002130	GO:0000413\|GO:0003755
	Viun9g03949	232	PRINTS	Cyclophilin peptidyl-prolyl cis-trans isomerase signature	112	124	IPR002130	GO:0000413\|GO:0003755
	Viun9g03949	232	PANTHER	PEPTIDYL-PROLYL CIS-TRANS ISOMERASE	57	222	-	-
	Viun9g03949	232	Pfam	Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD	62	220	IPR002130	GO:0000413\|GO:0003755

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Duplication type information

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Select	Gene	Chromosome	Start	End	Duplicated_type
	Viun9g03949	Viun-Chr9	43493442	43498008	Dispersed/Wgd

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Functional genes information

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Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Viun9g03949	70	224	U-box Gene Family	AT5G67530	41.026	1.42e-26	105

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Pathway information

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Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Viun9g03949	-		-	vra:106760817	410.609

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