Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun9g03943 ATGAGCGAGAGTGAGAAGCAGAGGGTAACGGGAAAGGTGAAGTGGTTCAATGACCAGAAGGGATTTGGCTTCATAACCACCGATGACGGCGGCGAGGATCTCTTCGTCCACCAGTCCTCCATCCGATCCGACGGTTTTCGCAGCCTCGCCCTCGGAGAGTCCGTCGAGTTCCTAATCGACTCCGATTCCGAAGGTCGCACCAAGGCCGTTGACGTCACCGGCCCTGACGAATCGCCCGTGCAGGGCACCCGCGGTGGCGGAGGCGGAGGAGGAGGAAGAGGTGGATACGGCGGAGGTGGTGGAAGAGGTGGATATGGCGGCGGAGGACGCGGAGGACGAGGTGGATATGGAGGCGGTGGCGGATATGGTGGAGGTGGCTATGGCGGAGGCGGTGGATATGGTGGTGGAGGTGGTGGTGGTGGAGGGGGTTGCTATAAGTGTGGCGAGACGGGTCACATAGCGAGGGACTGCAGCCAAGGTGGAGGTGGCGGTGGAAGGTACGGCGGAGGTGGTGGCGGAGGTGGCGGTGGTAGCTGCTACAACTGTGGGGAGTCTGGGCATTTTGCGAGGGACTGCCCTTCGAATGCGCGTTGA 594 0.6212 MSESEKQRVTGKVKWFNDQKGFGFITTDDGGEDLFVHQSSIRSDGFRSLALGESVEFLIDSDSEGRTKAVDVTGPDESPVQGTRGGGGGGGGRGGYGGGGGRGGYGGGGRGGRGGYGGGGGYGGGGYGGGGGYGGGGGGGGGGCYKCGETGHIARDCSQGGGGGGRYGGGGGGGGGGSCYNCGESGHFARDCPSNAR 197
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun9g03943 197 Pfam 'Cold-shock' DNA-binding domain 10 74 IPR002059 GO:0003676
Viun9g03943 197 Gene3D - 174 197 - -
Viun9g03943 197 Gene3D - 140 166 - -
Viun9g03943 197 SUPERFAMILY Nucleic acid-binding proteins 7 74 IPR012340 -
Viun9g03943 197 ProSiteProfiles Cold-shock (CSD) domain profile. 8 74 IPR002059 GO:0003676
Viun9g03943 197 Gene3D - 1 85 IPR012340 -
Viun9g03943 197 Pfam Zinc knuckle 178 194 IPR001878 GO:0003676|GO:0008270
Viun9g03943 197 Pfam Zinc knuckle 143 159 IPR001878 GO:0003676|GO:0008270
Viun9g03943 197 SMART c2hcfinal6 178 194 IPR001878 GO:0003676|GO:0008270
Viun9g03943 197 SMART c2hcfinal6 143 159 IPR001878 GO:0003676|GO:0008270
Viun9g03943 197 ProSiteProfiles Zinc finger CCHC-type profile. 144 159 IPR001878 GO:0003676|GO:0008270
Viun9g03943 197 CDD CSP_CDS 9 74 IPR002059 GO:0003676
Viun9g03943 197 MobiDBLite consensus disorder prediction 65 95 - -
Viun9g03943 197 SUPERFAMILY Retrovirus zinc finger-like domains 135 195 IPR036875 GO:0003676|GO:0008270
Viun9g03943 197 ProSitePatterns Cold-shock (CSD) domain signature. 22 41 IPR019844 -
Viun9g03943 197 ProSiteProfiles Zinc finger CCHC-type profile. 179 194 IPR001878 GO:0003676|GO:0008270
Viun9g03943 197 PRINTS Cold shock protein signature 47 65 IPR002059 GO:0003676
Viun9g03943 197 PRINTS Cold shock protein signature 11 26 IPR002059 GO:0003676
Viun9g03943 197 PRINTS Cold shock protein signature 32 41 IPR002059 GO:0003676
Viun9g03943 197 PANTHER COLD SHOCK DOMAIN PROTEIN 2 111 195 - -
Viun9g03943 197 SMART csp_8 10 75 IPR011129 GO:0003676
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun9g03943 Viun-Chr9 43453525 43454559 Dispersed/Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF CSD Viun9g03943 CSD 2e-25 CL0021
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun9g03943 - - mnt:21407697 169.474
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Viun9g03943 9 43453525 43454559 Viun9g03943 9 43453525 43454559 ECH