Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun9g03940 ATGGAGTCAAAGCATGATTTTGTGAACCGGACGCTTGAATACATTCTTCATAGAGTCCCAGACACAGAGATTAACGGTAACATGCTAAAAAATTCGCTTCGAATCGGCCAAGTTTTTGGTCTTGAGCCCCGCAACAAGAAGACCGTTTTTCTCAAAATTCTTCAACACTACCTCTCCACTCACTCCATCACCGAACCCCTTCTCTATACCCTCGAGCTCCTTGCGGAACTCTTTTGCTGCGATGCCTCTCCGGTCCCCGCTACCATGACTGCCGCCTACTGCGCCGTGGCGGTGGAATGCACGCTCAAGTATCTGAAATTAAGTCGCCACCACCACAATCCTCTCTACCTCGATGCCGTGAACAGGATATGGCGAGTTAGGATTGCGCTTATGAATAGTTCCGGTTCCGGAAAAGAGAGTGTTCTGCTTTCAGGGGAGTTGGAGCAGTGGAGAAAGGACATTGAAACTTCACTTTTGGATTCAGAAGTAATGGAAAGGTTGGCCTCCATAGATACTAAAAGGGATGCCATGGTGAAGGTCAAAGCATTTTTAGATGAAGCCCGTACCGATTTGGAACCCGGAAGTCTGAAGTGTAGCAGTGTTGCGGCTGATAACGATAATCAAACCTCTGTTTTTGAGAATTGTGACCAAGGTCCTTGTTCGGTGGAAACAAATATTATTGCTGGTGTTAATGAGTCTGGAAAATCCATTTCTGGGGAGTTGTTGGTGAAGGAATCTTTACCAATAACTCTTATCACTGAGAGTTCTGATCGAAGATTTATTTTAGTGGATAAAAGTACAACTGCTGATGTTTATGAGTGGGATGAGTCAATAGATGGCTTGGAGGGTGGAACATCAAACCGTGCAAGTAGATTTAATTTGCCTAGTCCCAAGAGGAGAAATCTTTCTCCATTGAAGAAGTATGAACCAAAAGAAACTAAAATGAGGAGAAAAGCAAGAAGGTGGAATCAGTTAGAAGAGGCGACGCTCAGAGAAGGCGTAGTCAAGTTTGGCAAGGGAAATTGGAAGTTAATCCTAAATTCTGAGAAAGATATATTTGCAGGAAGAACGGAGGTTGATTTGAAGGACAAGTGGAGGAATATGTCGCGGCGTAAGCACGAATAA 1125 0.4427 MESKHDFVNRTLEYILHRVPDTEINGNMLKNSLRIGQVFGLEPRNKKTVFLKILQHYLSTHSITEPLLYTLELLAELFCCDASPVPATMTAAYCAVAVECTLKYLKLSRHHHNPLYLDAVNRIWRVRIALMNSSGSGKESVLLSGELEQWRKDIETSLLDSEVMERLASIDTKRDAMVKVKAFLDEARTDLEPGSLKCSSVAADNDNQTSVFENCDQGPCSVETNIIAGVNESGKSISGELLVKESLPITLITESSDRRFILVDKSTTADVYEWDESIDGLEGGTSNRASRFNLPSPKRRNLSPLKKYEPKETKMRRKARRWNQLEEATLREGVVKFGKGNWKLILNSEKDIFAGRTEVDLKDKWRNMSRRKHE 374
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun9g03940 374 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 314 373 IPR017930 -
Viun9g03940 374 ProSiteProfiles Myb-like domain profile. 314 369 IPR001005 -
Viun9g03940 374 Gene3D - 322 374 - -
Viun9g03940 374 SMART sant 318 371 IPR001005 -
Viun9g03940 374 PANTHER MYB TRANSCRIPTION FACTOR 235 370 - -
Viun9g03940 374 SUPERFAMILY Homeodomain-like 315 370 IPR009057 -
Viun9g03940 374 CDD SANT_TRF 320 370 - -
Viun9g03940 374 Pfam Myb-like DNA-binding domain 321 367 IPR001005 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun9g03940 Viun-Chr9 43429545 43436543 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun9g03940 83 372 Single Myb Histone (SMH) Gene Family AT1G15720 30.094 7.18e-27 108
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB-related Viun9g03940 Myb_DNA-binding 1.2e-06 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun9g03940 - - vun:114163309 744.577