LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Viun9g03925	ATGGAGAAACGCAATCTCCGAAGCTCCAAGGTCCAATCGCCAAAGCCCGTTCAATTCAGTTCCAAGACGCCGGACAAACTGTCGCAACGGATCCGCAACCGCGGCGTCGCGCAAGGGTTGGCAGACATAAAAAAAGTCTGCAAGGGTTTACAGGATCGGAAGCGACGCGGTGAAACGAAATCGTTACCGCCGCAAAGCAAGACTGTGAGAAGGCAGATCTTACAGTGTTCTTCTCCGAGTAAATCCAAGAGTACTGACGATCATCCTTCCAAGCTTCCGGAAAAATATGAAATTTTGGATCATTTCTTCGATCGCTTGGACACTTTAATTTCAATGTTCTCTCTGAAAGGGAAGACGCCATCTTTTACGGAAATCAGTTCTAGAATTGAATCTTTAACAGACAGGAGGTTTACTCACGGCCATCTAGCACAGTTGAAATTTATCTTGCCTGAAGCTATTGTTCTGAAGAAGTTTCTAGTGCATGATGAACGGACCAGTTGTATGAAGCCAGATATTCACATTTCTTTAGCCCCTGAGGCGGTAGAGTCTGATTCGAAGATGCCCCCTCAACGTGGGAGAGTGTCATTGAAAAAGTTGTTTCACGCACGGCTTAGAGAATTTTGGGAATCGCATCCTGAGGGTGATGAAATTCCAGAAGGAACTTTGCCAGAGCCATTCAATCGCCCAAAGAAAGTCAATATTTTAGACACGTTGGAAACTCGTCTCCCAACAAAATTATCACTCTGCATGCGCTATAATGACATTGTCAATAATGTAGAGTCTGATAGTATAGATGAAAATAAGTCTGCTGCACCTGTAGAAACATCAATTGAATTGCCTAATGAGCATCTAGCAGCAGCTTCTCACATTGCTCCATCCTTTAGAGCAAGATTTTCTTTGAAATTTAAACAAAATTTAGCAGATACTGTACAGCAAAATTCTCAAGTAGATTCAGTACAACCCTCCCCAGCTAAGTTGGCTTCACAAGCAGCTAGAACTGAAAATTGTTCATGTGCCTCCCTGGAATCATCCAGTGAAAATTGTGCAACATGTGCCTCTCTGGAATCATCATGTGCTCCCGCTCCCAGTTCTTCTCCATGCAAAACCGTCGACAACACAGAAAGCGAAGATGGGTCTCTCGATAATATTGATGCCATGTCAACCCCAGCAAGAAAAAACGTCGAGTACATAGAAAACAAAGATGGTTCTTTCAAGAGGATTGATGCCATGTCAACTCCAGCTAAACTTGTTTCTACTCCAATTAGATTGATGAGTGCCACACCTGCCTTGCGTTCAACCAAAAGAAATCTTATGAGCCCAGATGACCACCCAACCAGTTCTTTGAACAAGTTAGCTAGGCGTCCACCTCGCTCAAGGTCATTGGTATTTGACACCCCGGTGAAGAATGAGGATGTTGTGAATGAAGACAATGCCGGTGGATTACCAATAGATGATGATATTTTTGACATCCTCCCAGGAAAACTTATCCAATCGATTAGAGAAAAGGAAAGAATGACAATGGAGGAAAGAGATCCAGCTATCACTCAAGCCAAGAAACGGAAAAAAAATATAGCTAACCTTCCAAAGCTCTTTGACATGATTCGTCTCTTGCTTCGACAGCGGAATTGTATCACTAAAATGGAGCTTGTAAGCAAGATAATTTCAAGCCACAGCGATATTGTTGACAGAAGTGAAGTTGAAGAACAGTTAGATTTGTTACAAGAACTAGCACCGGAATGGATTTCTGAGAAGCAGGTCTCTAGTGGTGATTTGCTCTTATTCATAAACAAAATGTTGAACCCTGAAACCATTCGAGCATCTCTTGAAGAAGCGGCATAG	1839	0.4279	MEKRNLRSSKVQSPKPVQFSSKTPDKLSQRIRNRGVAQGLADIKKVCKGLQDRKRRGETKSLPPQSKTVRRQILQCSSPSKSKSTDDHPSKLPEKYEILDHFFDRLDTLISMFSLKGKTPSFTEISSRIESLTDRRFTHGHLAQLKFILPEAIVLKKFLVHDERTSCMKPDIHISLAPEAVESDSKMPPQRGRVSLKKLFHARLREFWESHPEGDEIPEGTLPEPFNRPKKVNILDTLETRLPTKLSLCMRYNDIVNNVESDSIDENKSAAPVETSIELPNEHLAAASHIAPSFRARFSLKFKQNLADTVQQNSQVDSVQPSPAKLASQAARTENCSCASLESSSENCATCASLESSCAPAPSSSPCKTVDNTESEDGSLDNIDAMSTPARKNVEYIENKDGSFKRIDAMSTPAKLVSTPIRLMSATPALRSTKRNLMSPDDHPTSSLNKLARRPPRSRSLVFDTPVKNEDVVNEDNAGGLPIDDDIFDILPGKLIQSIREKERMTMEERDPAITQAKKRKKNIANLPKLFDMIRLLLRQRNCITKMELVSKIISSHSDIVDRSEVEEQLDLLQELAPEWISEKQVSSGDLLLFINKMLNPETIRASLEEAA	612

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Viun9g03925	612	Pfam	DNA replication factor CDT1 like	92	185	IPR014939	-
	Viun9g03925	612	MobiDBLite	consensus disorder prediction	434	457	-	-
	Viun9g03925	612	MobiDBLite	consensus disorder prediction	359	373	-	-
	Viun9g03925	612	MobiDBLite	consensus disorder prediction	1	91	-	-
	Viun9g03925	612	CDD	Cdt1_m	77	231	IPR014939	-
	Viun9g03925	612	MobiDBLite	consensus disorder prediction	359	387	-	-
	Viun9g03925	612	MobiDBLite	consensus disorder prediction	62	83	-	-
	Viun9g03925	612	MobiDBLite	consensus disorder prediction	10	26	-	-
	Viun9g03925	612	FunFam	CDT1-like protein a chloroplastic	484	612	-	-
	Viun9g03925	612	Coils	Coil	605	612	-	-
	Viun9g03925	612	SMART	CDT1_2	92	224	IPR014939	-
	Viun9g03925	612	PANTHER	DNA REPLICATION FACTOR CDT1	8	611	IPR045173	GO:0003677\|GO:0030174\|GO:0071163
	Viun9g03925	612	Gene3D	-	485	612	IPR038090	-
	Viun9g03925	612	MobiDBLite	consensus disorder prediction	46	61	-	-
	Viun9g03925	612	Pfam	DNA replication factor Cdt1 C-terminal domain	495	586	IPR032054	-
	Viun9g03925	612	CDD	Cdt1_c	490	609	IPR032054	-
	Viun9g03925	612	SUPERFAMILY	"Winged helix" DNA-binding domain	88	226	IPR036390	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Viun9g03925	Viun-Chr9	43364252	43367856	Dispersed

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Viun9g03925	411	610	Core DNA Replication Machinery Family	AT2G31270	49.065	5.45e-46	169

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Viun9g03925	K10727		-	gmx:100778818	728.398