Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun9g03912 ATGGACGAGGAGGAACGTGCTAAAGGAAGTTCTGTCTCAGGGGTTGTCGCCGCCGACCAAACCCCAGAGCAACTGGTCTCCAGGGCCATAGCCCCCGTCAAGAAGAAATTCCTCCGCCCTCCTCCGGTTCGGTCTTCCGCTCCAGACGACGACGTTTCCATTCCCACCGAAAACAATAACTATGTTCTGGCCATGGAGACAAAGTCTAAGCGCCAACTCAAACGCGAACGTCTTGAGGGACAAAAGTCGGCACAAAACCTATGTCCCGAAATTGCGAAGACGGGGGATGTTAGTTCGTGTCCTTATAAAGACAAATGTCGTTCGAGCCATGATTTGGAAGGCTTCATGGCGCAGAAACCGTCTGATCTTGAAGGAGAATGCCCGTTCGTTAAATATGGAGTATCCTGCCCTTATGGCATAGCGTGTAGATTTTTGAATACGCATGAAGGTGGTGTGCCTTCTGGCGATCGAAATGGTCTGGAGAATAGTTCCGAGGTGAATGGGTTGAGGAAGGATACTCAAAGGCTTTTGTGGAAAAATAAGATGAACTTCTCCAAGGCAGATGCCAAACTCAAAAGTCTCGGCCTCCTGGGACGGTCAAAGTCAAAAAGGAATGACTTGGAAAATAAAGAGGGAGTTGACACTGGTTCAAATAAGTATGATCATTCTGATGATAGTGGCTCTTGTGTTGTTACGTCTGACTCAGGTTCTAAGTTGGACTGCCCTGCTGAAGATAGAAAATCTAAATCTGATGAACTTTGTCCCCTGAAGCGAAGAAAAACTAAAGAAAATTGTGGTCCTAAGGAGTCAGAAAATGAAGGTGTTACTGAGAAAATTGTTGAAAGAAGATGCACCGAATCTGAAGCTGATGCTATAGTCCCAGAAACTGATCTAAGCCTGAAGCTTCACTCGCGTGAGAAGAAGCTTATTGATTTCAGGAGGAAGTTGTATCTTGCACCCTTAACTACTGTTGGCAATCTCCCTTTTCGGAGAGTTTGCAAAGTATTAGGTGCTGATGTGACTTGTGGTGAAATGGCAATGTGCGCAAATCTTTTGGAGGGTCAAGCGTCAGAATGGGCATTGCTAAGACGACATTCATCTGAAGATTTGTTTGGTGTACAAATCTGTGGGGCATATCCAAATATTGTGGCACGAACAGTTGAATTAATAGAGCAAGAATGTACTGTAGATTTTATTGACATAAATATGGGTTGCCCTATTGACATAGTTGTGAATAGGGGTGCTGGATCAGCTCTTTTAACAAAACCAATGCGGATGAAAGGTATCGTAGAAGCAGCTTCGGGTACAGTGGATAAACCAATAACTATCAAGGTACGGACTGCTTATTTTGAAGGGAAGAACCGCATTGATTCTCTGATAGCAGACATTGGCTCTTGGGGAGCCAGCGCTGTGACAATACATGGTAGGTCACGTCAACAACGTTATAGCAAGCTTGCTAACTGGGACTATGTATACGAGTGTGCAAAGAAAGCCCCTACTACATTGCCAGTAGTGGGGAATGGAGATGTTTTCTCATTTGTAGACTGGAACAAGCACAGAACTGAATGCCCTGAACTTGCTACGGACATGATTGCTCGTGGTGCACTTGTTAAACCTTGGATATTTACGGAGATCAAGGAACAAAGACATTGGGACATCAGTTCTGGCGAGCGGCTAAATATTCTCAAAGATTTTGTGAATTTTGGTCTTGAACACTGGGGTTCTGACACAAAAGGGGTTGAGAGAACAAGGCGGTTCTTGTTGGAATGGCTTAGCTACTGTTGCAGGTATATACCTGTTGGTCTTTTGGATGTAGTTCCTCAACGGTTAAACTGGCGTCCACCTTCTTACTATGGTCGTGATGAGCTTGAGACACTAATGGCCTCAGACTCTGCTGCTGATTGGATACGAATATCAGAGATGTTACTCGGTAAGGTTCCTGATGGGTTTACATTTGCACCAAAGCATAAATCAAACGCATACGATAGAGCTGAAAATGGTTAA 2004 0.4461 MDEEERAKGSSVSGVVAADQTPEQLVSRAIAPVKKKFLRPPPVRSSAPDDDVSIPTENNNYVLAMETKSKRQLKRERLEGQKSAQNLCPEIAKTGDVSSCPYKDKCRSSHDLEGFMAQKPSDLEGECPFVKYGVSCPYGIACRFLNTHEGGVPSGDRNGLENSSEVNGLRKDTQRLLWKNKMNFSKADAKLKSLGLLGRSKSKRNDLENKEGVDTGSNKYDHSDDSGSCVVTSDSGSKLDCPAEDRKSKSDELCPLKRRKTKENCGPKESENEGVTEKIVERRCTESEADAIVPETDLSLKLHSREKKLIDFRRKLYLAPLTTVGNLPFRRVCKVLGADVTCGEMAMCANLLEGQASEWALLRRHSSEDLFGVQICGAYPNIVARTVELIEQECTVDFIDINMGCPIDIVVNRGAGSALLTKPMRMKGIVEAASGTVDKPITIKVRTAYFEGKNRIDSLIADIGSWGASAVTIHGRSRQQRYSKLANWDYVYECAKKAPTTLPVVGNGDVFSFVDWNKHRTECPELATDMIARGALVKPWIFTEIKEQRHWDISSGERLNILKDFVNFGLEHWGSDTKGVERTRRFLLEWLSYCCRYIPVGLLDVVPQRLNWRPPSYYGRDELETLMASDSAADWIRISEMLLGKVPDGFTFAPKHKSNAYDRAENG 667
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun9g03912 667 ProSiteProfiles Zinc finger C3H1-type profile. 82 113 IPR000571 GO:0046872
Viun9g03912 667 MobiDBLite consensus disorder prediction 37 58 - -
Viun9g03912 667 FunFam tRNA-dihydrouridine(47) synthase [NAD(P)(+)] 79 156 - -
Viun9g03912 667 MobiDBLite consensus disorder prediction 202 221 - -
Viun9g03912 667 FunFam tRNA-dihydrouridine(47) synthase [NAD(P)(+)] 311 553 - -
Viun9g03912 667 Pfam Dihydrouridine synthase (Dus) 318 553 IPR035587 -
Viun9g03912 667 SUPERFAMILY FMN-linked oxidoreductases 315 628 - -
Viun9g03912 667 MobiDBLite consensus disorder prediction 1 21 - -
Viun9g03912 667 ProSitePatterns Uncharacterized protein family UPF0034 signature. 399 417 IPR018517 GO:0008033|GO:0017150|GO:0050660
Viun9g03912 667 Gene3D Aldolase class I 311 553 IPR013785 -
Viun9g03912 667 PANTHER TRNA-DIHYDROURIDINE(47) SYNTHASE [NAD(P)(+)]-LIKE 21 661 - -
Viun9g03912 667 MobiDBLite consensus disorder prediction 202 247 - -
Viun9g03912 667 CDD DUS_like_FMN 315 550 IPR035587 -
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C3H Viun9g03912 Dus 2.1e-49 CL0036
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun9g03912 K05544 - gmx:100783494 1133.63
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Viun9g03912 9 43306723 43312520 Viun9g03912 9 43306723 43312520 ECH