Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun9g03901 ATGGACGCCGAAGATGACGAAGCTTCACTCCAATCACACTCTGATGCACAATGCCACACCGACATGCAAGATATCCCCTACGCCGCCGCGGAAGTCCCTGAGCCCGATACCGTGGGGGAGCTGAGCGCCGCCGCCGCCGTGCATGAGGTCGCCGCTGTTGAACCAGATGCGACGATGGAGGCGGCGGTTGAGTCCGACGAGGGCGTCGGAGCGCAAGTGATGGACGAGGTAATTGAGGAGAAGGGGAATGAGGTCACCGATGTGGACGACGTGGCGTTGGAGATGGAGAACGTCGAAGAGGAAGCGAATTTGGCAATTGATGCGGAAGAGGACGAAATTGGGGACGATGACGCAAACGAAGACGCTTTGATGGAAGACGAAGAAGACGAACAGCAACAAGGAGAGGAGGAGGAGGAGGAGGATGGGGAGGAGGGGGAGGAGGAAGAAAAACAACAGCACGGAGTGGATGAGGAAGAAGATGAACAGCAACAAGGTGAAGAGGAGGAGGAGGAGGAAGAAGAAGAAGAAGAACAGCAACAGGGAGAAGAAGATGCTGATGCTGGAATGGCAAAAACAGAAGATACAGAGGAGAAGGAGGAGAAGAGTGTGAGTAGTGGGAAGAGGAAGCGTGGGGCTGGGAAGAATGCTAAGACTACAGGGAGAGTTGCGTCCAGGAAAAAGACGGAAGAGGATGTTTGTTTCATTTGCTTTGATGGAGGTGACCTTGTGCTCTGTGACCGCAGGGGATGTCCCAAGGCTTACCATCCTTCCTGCGTTAATCGTGATGAGGCATTCTTTCGAGCAAAGGGAAAGTGGAATTGCGGTTGGCATCTTTGCAGCAACTGTGAGAAGAATGCAAACTATATGTGCTATACATGTACTTTTTCTCTGTGCAAGGGATGCATCAAAGACGCTGTTATCTTATGTGTCAGGGGAAACAAGGGATTTTGTGAGACATGCATGAGAACTGTAATGTTGATTGAACAGAATGTGCAGGGAAGCAATGTGGGACAAGTAGATTTTGATGACAAAAACAGCTGGGAGTATCTCTTCAAGGACTACTACATAGATCTAAAAGAAAAACTATCTCTAACATTTGATGAAATCACTCAAGCTAAAAACCCTTGGAAGGGATCTGATATGCTTCATTCTAAGGAGGAATCACCGGATGAACTTTTTGATGCCACTAATGATAGAGGATCAGATTCTGATAGCTCCTATGAAAATGATTCGAATCGCCCTAAAAGAAGAAAGGCAAAGAAACGGGGTAGGCCCCGTTCCAAAGAAGGAAATTCGAATGGTGCCGTGACAGTGTCCGGTGCTGATGGGCCATCAGGAGATGACAGCTTTGAGTGGGCTTCAAAAGAGCTTCTGGAGTTTGTTATGCACATGAGAAATGGAGACAAATCTGTTTTATCTCAGTTTGATGTGCAGGCTCTTTTGCTTGAGTATATTAAAAGAAATAAGCTTCGAGATCCTCGCCGAAAAAGTCAGATTATATGTGATGCAAGACTTCAAAATCTTTTTGGTAAACCAAGAGTGGGACATTTCGAGATGTTAAAGCTTCTTGAGTCCCATTTCCTTCTGAAAGAGGATTCTCAGGCCGAAGATCTGCAGGGAAGTGTTGTTGACACTGAAATTAGTCATTTGGAAGGAGATGGGAATCCCAATTCATATATGAAAGCTGGTAAAGATAAGAAGCGTAAAAATCGCAAAAAGGGTGATGACAGAGGACTTCAAACTAATGTTGATGATTATGCAGCTATTGATAACCATAATATTAATTTAATTTATCTCCGACGAAATCTGGTTGAAGATCTACTTGAAGATACAGAGAAGTTTCACGATAAAGTTGTTGGTTCTTTTGTGAGAATAAGAATTTCTGGCAGTGGTCAGAAGCAAGACTTATATAGGCTGGTTCAGGTTGTAGGTACATGCAAAGCAGCAGAGCCATATAAAGTTGGTAAAAGGATGACAGATACGTTGCTAGAAATCTTAAATTTAAACAAGACAGAGATTGTATCTATTGATATTATCTCAAATCAGGAGTTCACAGAGGATGAATGCAAACGTCTCCGCCAAAGCATTAAGTGTGGTCTCATAAATCGGCTAACTGTGGGTGACATACAGGACAAAGCACTGGTGCTTCAGGCAGTTAGAGTAAAAGATTGGCTAGAAACTGAGATAGTGCGGCTGAGTCATCTCCGTGATAGAGCCAGTGAGAAAGGACGCCGAAAAGAGCTTAGAGAATGTGTAGAGAAACTGCAGCTTTTGAAGACACCTGAAGAACGTCAACGTAGGTTAGAGGAAATTCCAGAGATACACGTGGATCCAAACATGGATCCCAGTTATGAATCTGAAGAAGACGAAGATGAAATGGACGATAAAAGACGAGAAAACTTCATGAGACCTAGAGGGTCTACTTCCTTTGGAAGGAGGGGGAGAGATATTGCTTCTCCTAGAAGTGTTTCTATTTCAAATGATTCTTGGAGTGGAACGAGGAATTATTCAAATGCGAATCAGGAGCTTAGCAGAAATTTGTCCAATAAGGGTTTTTCAATCAAAGGTGAAAATGCTTCTAATGTTAACGAGGTACTGAATGATACTCATTTGCACCAGGGAAGAGATAGGGAATCACAACTATCTAATAGCTGGGAGAGGCAAAAACTCTCTTCAAGCTTGGAAAGTGGTGCTAAAAGTACCCAGTCATTGGTAACATCTGATTCTTTCTCTACTGCTGTATTGGAAGCTTCTGCAGCACCATCTTCCGCTGGAATAACTCCTTCAGCTTTGAAAATTAATGAAACTGAAAAGATGTGGCATTACCAGGATCCTTCTGGAAAAATTCAGGGACCATTTTCTATGGTGCAGTTACGTAAATGGAGCAACACAGGATACTTTCCCGCTGATTTGAGGGTTTGGAGAACCACTGAGAAGCAAGATGATTCTATACTCGTGACAGATGCCTTGGCAGGGAATTTTGCTAAAGAACCATCGATGGTGGAGAAGGCTCAAAAGGTGCATGATTTACATTACCCAGCCTCGTACTCTAGGAAGTCTGCACAGGGTATGGAAGGTCAAGCTGGAGAAAGACCAACATTTGATCAAAATAGTGGATCTCTGAATTCACATGGTACTCTGGGTTCTCCGGGACAAACAACAGTAGGAAGTTGGAGATCTAAAGATAATATGAATTCTATAGCAAGTAGAACCTCTCCATTGGCTGTTGAGGTCCCCAAGAACCCTGCAAACGGCTGGAGTTCTGATGCTGGTAGTAGAAATGAAACAACAAATCTTCCTTCACCTACACCTCAGACTACCCCTGGTGTGACTAAGGGGCAGGCTTTTGAAAATAAATGGTCACCAACACCTGTCCAGTTGCCTGGGTCTCTAGTAGGAAATTCATTCCCAGGCAATCATGGAGGTTTGCAGGCCTCTTTGGTAGTGCAAAATCCTGAAAAAGGCTCATCACAACCCGGTATTAGTTCAGCATCTTCAGATAATTCTAGGTTACATCCTCAACCAGCACCGGTGGCACCTGTTCTGCCTTCAGGGCTTGACCTCAAAATGGCAGGTTTACCCACACCTGGATTTCTGGGCATGAATACACCCGAGCCTTGGAGACCACCAGCTTCAAGTAGTCAGCCAAACATCACAGCTCCTTCTCCAGCTCCACCCAATCTGCCTTGGGGGATGGCCATGCCAGGAAATCAGAATATGAACTGGGCTGCTGCCAATATGAACGCAAACTGGATGCCTGCGCAAGGGCCAGCACCAGGAAATTCAAATCCAGGATGGGCTGCCCCTAGTCAGGGGCTACCTCCAGTGAATGCAGCTGGCTGGGTTGGGCCTGGTCAAGGCCGTTCCCATGTAAATGTGAATGCAGGTTGGGCTGGGCCTGGTCAGGGTCTACCACCTGGAAATGCCAATCCTGTTTGGGTTCCACCAGCAGGGAATCCAGGCGTGTGGGTAAATGAGCAAAGTCATAATGGAGAGCGGTTCCCTAACCAAGGGGATCGAGGTACCCAAAGTAGAGATTCTGGTTATGGTGGTAAATCATGGAACAGGCAATCATCCTTTGGCAGAGGAGCTCCTTCCAGGCCTCCTTTCGGGGGACAACGAGGAGTTTGCAAGTATCATGAGAGTGGACATTGCAGGAAGGGGGATTCTTGTGATTTTCTACACAATTAG 4191 0.4574 MDAEDDEASLQSHSDAQCHTDMQDIPYAAAEVPEPDTVGELSAAAAVHEVAAVEPDATMEAAVESDEGVGAQVMDEVIEEKGNEVTDVDDVALEMENVEEEANLAIDAEEDEIGDDDANEDALMEDEEDEQQQGEEEEEEDGEEGEEEEKQQHGVDEEEDEQQQGEEEEEEEEEEEEQQQGEEDADAGMAKTEDTEEKEEKSVSSGKRKRGAGKNAKTTGRVASRKKTEEDVCFICFDGGDLVLCDRRGCPKAYHPSCVNRDEAFFRAKGKWNCGWHLCSNCEKNANYMCYTCTFSLCKGCIKDAVILCVRGNKGFCETCMRTVMLIEQNVQGSNVGQVDFDDKNSWEYLFKDYYIDLKEKLSLTFDEITQAKNPWKGSDMLHSKEESPDELFDATNDRGSDSDSSYENDSNRPKRRKAKKRGRPRSKEGNSNGAVTVSGADGPSGDDSFEWASKELLEFVMHMRNGDKSVLSQFDVQALLLEYIKRNKLRDPRRKSQIICDARLQNLFGKPRVGHFEMLKLLESHFLLKEDSQAEDLQGSVVDTEISHLEGDGNPNSYMKAGKDKKRKNRKKGDDRGLQTNVDDYAAIDNHNINLIYLRRNLVEDLLEDTEKFHDKVVGSFVRIRISGSGQKQDLYRLVQVVGTCKAAEPYKVGKRMTDTLLEILNLNKTEIVSIDIISNQEFTEDECKRLRQSIKCGLINRLTVGDIQDKALVLQAVRVKDWLETEIVRLSHLRDRASEKGRRKELRECVEKLQLLKTPEERQRRLEEIPEIHVDPNMDPSYESEEDEDEMDDKRRENFMRPRGSTSFGRRGRDIASPRSVSISNDSWSGTRNYSNANQELSRNLSNKGFSIKGENASNVNEVLNDTHLHQGRDRESQLSNSWERQKLSSSLESGAKSTQSLVTSDSFSTAVLEASAAPSSAGITPSALKINETEKMWHYQDPSGKIQGPFSMVQLRKWSNTGYFPADLRVWRTTEKQDDSILVTDALAGNFAKEPSMVEKAQKVHDLHYPASYSRKSAQGMEGQAGERPTFDQNSGSLNSHGTLGSPGQTTVGSWRSKDNMNSIASRTSPLAVEVPKNPANGWSSDAGSRNETTNLPSPTPQTTPGVTKGQAFENKWSPTPVQLPGSLVGNSFPGNHGGLQASLVVQNPEKGSSQPGISSASSDNSRLHPQPAPVAPVLPSGLDLKMAGLPTPGFLGMNTPEPWRPPASSSQPNITAPSPAPPNLPWGMAMPGNQNMNWAAANMNANWMPAQGPAPGNSNPGWAAPSQGLPPVNAAGWVGPGQGRSHVNVNAGWAGPGQGLPPGNANPVWVPPAGNPGVWVNEQSHNGERFPNQGDRGTQSRDSGYGGKSWNRQSSFGRGAPSRPPFGGQRGVCKYHESGHCRKGDSCDFLHN 1396
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun9g03901 1396 CDD PHD5_NSD 232 277 - -
Viun9g03901 1396 SUPERFAMILY FYVE/PHD zinc finger 228 284 IPR011011 -
Viun9g03901 1396 FunFam Zinc finger CCCH domain-containing protein 19 439 534 - -
Viun9g03901 1396 FunFam Zinc finger CCCH domain-containing protein 19 939 996 - -
Viun9g03901 1396 MobiDBLite consensus disorder prediction 1202 1226 - -
Viun9g03901 1396 SUPERFAMILY Plus3-like 589 717 IPR036128 GO:0003677
Viun9g03901 1396 SMART gyf_5 938 993 IPR003169 GO:0005515
Viun9g03901 1396 ProSiteProfiles Zinc finger PHD-type profile. 230 296 IPR019787 -
Viun9g03901 1396 Gene3D - 938 997 IPR035445 -
Viun9g03901 1396 Coils Coil 88 112 - -
Viun9g03901 1396 MobiDBLite consensus disorder prediction 1018 1179 - -
Viun9g03901 1396 MobiDBLite consensus disorder prediction 763 837 - -
Viun9g03901 1396 ProSiteProfiles SWIB/MDM2 domain profile. 446 529 IPR003121 -
Viun9g03901 1396 MobiDBLite consensus disorder prediction 377 446 - -
Viun9g03901 1396 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 219 324 IPR013083 -
Viun9g03901 1396 CDD SWIB-MDM2_like 452 527 - -
Viun9g03901 1396 PANTHER ZINC FINGER CCCH DOMAIN-CONTAINING PROTEIN 44-RELATED 137 1396 - -
Viun9g03901 1396 MobiDBLite consensus disorder prediction 96 222 - -
Viun9g03901 1396 SMART rtf1 588 698 IPR004343 GO:0003677
Viun9g03901 1396 MobiDBLite consensus disorder prediction 1325 1375 - -
Viun9g03901 1396 ProSitePatterns Zinc finger PHD-type signature. 233 293 IPR019786 -
Viun9g03901 1396 MobiDBLite consensus disorder prediction 763 782 - -
Viun9g03901 1396 MobiDBLite consensus disorder prediction 820 837 - -
Viun9g03901 1396 Gene3D - 590 718 IPR036128 GO:0003677
Viun9g03901 1396 ProSiteProfiles Plus3 domain profile. 588 721 IPR004343 GO:0003677
Viun9g03901 1396 Gene3D SWIB/MDM2 domain 443 537 IPR036885 -
Viun9g03901 1396 SUPERFAMILY GYF domain 930 990 IPR035445 -
Viun9g03901 1396 FunFam Zinc finger CCCH domain-containing protein 19 222 322 - -
Viun9g03901 1396 Pfam SWIB/MDM2 domain 454 527 IPR003121 -
Viun9g03901 1396 SMART swib_2 461 532 IPR019835 -
Viun9g03901 1396 MobiDBLite consensus disorder prediction 1 29 - -
Viun9g03901 1396 Coils Coil 120 140 - -
Viun9g03901 1396 MobiDBLite consensus disorder prediction 1325 1362 - -
Viun9g03901 1396 MobiDBLite consensus disorder prediction 549 579 - -
Viun9g03901 1396 CDD GYF 937 992 IPR003169 GO:0005515
Viun9g03901 1396 FunFam Zinc finger CCCH domain-containing protein 19 589 718 - -
Viun9g03901 1396 SUPERFAMILY CCCH zinc finger 1374 1396 IPR036855 GO:0046872
Viun9g03901 1396 MobiDBLite consensus disorder prediction 884 898 - -
Viun9g03901 1396 ProSiteProfiles Zinc finger C3H1-type profile. 1371 1396 IPR000571 GO:0046872
Viun9g03901 1396 MobiDBLite consensus disorder prediction 379 414 - -
Viun9g03901 1396 MobiDBLite consensus disorder prediction 872 898 - -
Viun9g03901 1396 CDD Bbox1 278 304 - -
Viun9g03901 1396 MobiDBLite consensus disorder prediction 1085 1172 - -
Viun9g03901 1396 ProSiteProfiles GYF domain profile. 937 991 IPR003169 GO:0005515
Viun9g03901 1396 SMART PHD_3 232 278 IPR001965 -
Viun9g03901 1396 MobiDBLite consensus disorder prediction 1031 1072 - -
Viun9g03901 1396 MobiDBLite consensus disorder prediction 96 183 - -
Viun9g03901 1396 Pfam GYF domain 940 980 IPR003169 GO:0005515
Viun9g03901 1396 MobiDBLite consensus disorder prediction 184 207 - -
Viun9g03901 1396 SUPERFAMILY SWIB/MDM2 domain 449 528 IPR036885 -
Viun9g03901 1396 Coils Coil 155 185 - -
Viun9g03901 1396 Pfam Plus-3 domain 593 696 IPR004343 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun9g03901 Viun-Chr9 43220634 43232063 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun9g03901 230 303 PHD Transcription Factor Family AT4G14920 39.189 8.85e-07 52.0
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SWI or SNF-BAF60b Viun9g03901 Plus-3 2.2e-23 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun9g03901 - - gmx:121174757 1974.9