Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun9g03894 ATGGAGGTAGCTGTGGCCAAAGCGTTGAAACCGAGTTTAAGGAGGGAGTTCATCGTTCAGCAAACGCACTGCGAGGATTTTTTTTGCCTCAACGCCAACAACGTTGCCGGCGGCGACGATTTCTTCGTCGACGACCTATTTGACTTTTCAGACGGCTCTCTTCACCACGAACCACAAGAATACGTGGAAGAAAAAAAGAGTTTATCGGCCTCGTCGCAGTCAAAGGACCGTGGAGAAGACGATAGCAACTCTAATTCCACCGGAGTTTCTTATGACTCACTTTTCTCCGCCGAACTCGCCGTTCCGGCCGGTGATTTGGAGGACCTAGAGTGGGTTTCACACTTTGTTGACGATTCTCTCCCGGAGCTGTCTCTTTTATACCCGGTTCGTCCGGAGGAGGTGAACCGGCGAGTCGAACCGGAACCCTCAGCGAAGAAAACGCCTCGTTTTCCGTGTGAAATGAAGATAGCGACCAAGACGAGAACGGTAAGGAATAGAAAACCCAACGCTCGCGTGTGGTCGTTGGGCCCGTTGCTCTCCCTCCCGTCCTCGCCGTCTTCGTGCTCTTCTTCCGCGACGGAGCCGCCCGCGAAGAAGCAGAAGAAGCGGGCCGAGGCCCAGCCCGTTGGGGCCCAGGTTCAGCGGCGGTGCAGTCACTGTCAGGTGCAGAAGACGCCGCAGTGGAGGACGGGCCCACTGGGCGCAAAAACCCTCTGCAACGCGTGCGGGGTCCGCTACAAATCGGGTCGGCTTTTTTCGGAGTACAGACCGGCCTGTAGCCCAACCTTCTGCAGCGATATTCACTCCAATAGCCACCGGAAAGTGTTGGAGATTCGCAAGAAGAAAGGGGTGTCTGGGCCGGACACCGGTCCGGCCCATCCCCAGGCCCAAATGGTTCCCACCTGCTGA 909 0.5666 MEVAVAKALKPSLRREFIVQQTHCEDFFCLNANNVAGGDDFFVDDLFDFSDGSLHHEPQEYVEEKKSLSASSQSKDRGEDDSNSNSTGVSYDSLFSAELAVPAGDLEDLEWVSHFVDDSLPELSLLYPVRPEEVNRRVEPEPSAKKTPRFPCEMKIATKTRTVRNRKPNARVWSLGPLLSLPSSPSSCSSSATEPPAKKQKKRAEAQPVGAQVQRRCSHCQVQKTPQWRTGPLGAKTLCNACGVRYKSGRLFSEYRPACSPTFCSDIHSNSHRKVLEIRKKKGVSGPDTGPAHPQAQMVPTC 302
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun9g03894 302 ProSiteProfiles GATA-type zinc finger domain profile. 211 247 IPR000679 GO:0006355|GO:0043565
Viun9g03894 302 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 211 272 - -
Viun9g03894 302 Gene3D - 210 261 IPR013088 GO:0006355|GO:0008270
Viun9g03894 302 PANTHER GATA TRANSCRIPTION FACTOR 28 295 - -
Viun9g03894 302 PIRSF Txn_fac_GATA_plant 12 300 IPR016679 GO:0003677|GO:0005634|GO:0045893
Viun9g03894 302 ProSitePatterns GATA-type zinc finger domain. 217 242 IPR000679 GO:0006355|GO:0043565
Viun9g03894 302 MobiDBLite consensus disorder prediction 281 302 - -
Viun9g03894 302 MobiDBLite consensus disorder prediction 175 210 - -
Viun9g03894 302 FunFam GATA transcription factor 208 290 - -
Viun9g03894 302 MobiDBLite consensus disorder prediction 60 89 - -
Viun9g03894 302 Pfam GATA zinc finger 217 250 IPR000679 GO:0006355|GO:0043565
Viun9g03894 302 MobiDBLite consensus disorder prediction 60 82 - -
Viun9g03894 302 CDD ZnF_GATA 216 273 IPR000679 GO:0006355|GO:0043565
Viun9g03894 302 SMART GATA_3 211 265 IPR000679 GO:0006355|GO:0043565
Viun9g03894 302 MobiDBLite consensus disorder prediction 179 195 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun9g03894 Viun-Chr9 43187850 43189452 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun9g03894 40 282 C2C2-Gata Transcription Factor Family AT4G36240 44.094 3.26e-54 175
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-GATA Viun9g03894 GATA 9.5e-16 CL0167
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun9g03894 - - gmx:100808242 462.611
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Viun9g03894 9 43187850 43189452 Viun9g03894 9 43187850 43189452 ECH
Viun9g03894 9 43187850 43189452 Viun11g02500 11 38456529 38458268 ECH