Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun9g03890 ATGAAGATCCACTGTGATGTCTGTGACAAAATGGAAGCCACTGTTTTCTGTCCTGCAGATGAAGCTGCTCTTTGCCATGCCTGCGATCGCACCATTCACCACGCCAACAAGCTTGCAACCAAACACCCTCGTTTCTCTCTCATCTTCCCCACCTCCAAAGACTTTCCTCTCTGTGATATCTGCCAAGAGAAGCGTGCGTATCTCTTCTGCCAAGAGGACAGGGCCTTGTTCTGCAGGGAATGTGACCTTCCAATCCACAGAGCGAACGAACATACTCAGAAGCATAACAGGTTTCTTCTCACGGGGGTGAAGCTCTCCGCAAATTCTTTGGATTCTGCTTCCTCCTCCACCAATTGCACCGATACACTCACTGAAGGAAAAAACGCTCGATCTAGAATCAACACACCCAGATCAATTTCCAATGAAAATCTAAGCTCCTCTTGCAAGGCTGAAGACAACGTGGGAAGTGACACTGGCTCGGTTTCCACCAGCAGCATTTCTGAGTATTTGATCGAGACCATACCCGGTTACTGTTTCGAAGAACTTCTCGATGGTTCATTCCCACCTAATAATGGTTTCTAA 582 0.4759 MKIHCDVCDKMEATVFCPADEAALCHACDRTIHHANKLATKHPRFSLIFPTSKDFPLCDICQEKRAYLFCQEDRALFCRECDLPIHRANEHTQKHNRFLLTGVKLSANSLDSASSSTNCTDTLTEGKNARSRINTPRSISNENLSSSCKAEDNVGSDTGSVSTSSISEYLIETIPGYCFEELLDGSFPPNNGF 193
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun9g03890 193 ProSiteProfiles Zinc finger B-box type profile. 53 100 IPR000315 GO:0008270
Viun9g03890 193 CDD Bbox1_BBX-like 5 47 - -
Viun9g03890 193 MobiDBLite consensus disorder prediction 126 162 - -
Viun9g03890 193 Gene3D Classic Zinc Finger 1 99 - -
Viun9g03890 193 CDD Bbox1_BBX-like 57 100 - -
Viun9g03890 193 PANTHER B-BOX ZINC FINGER PROTEIN 22 1 184 - -
Viun9g03890 193 FunFam B-box zinc finger protein 21 1 98 - -
Viun9g03890 193 SMART bboxneu5 53 100 IPR000315 GO:0008270
Viun9g03890 193 SMART bboxneu5 4 47 IPR000315 GO:0008270
Viun9g03890 193 ProSiteProfiles Zinc finger B-box type profile. 1 47 IPR000315 GO:0008270
Viun9g03890 193 Pfam B-box zinc finger 56 92 IPR000315 GO:0008270
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun9g03890 Viun-Chr9 43152891 43154237 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun9g03890 1 188 C2C2-CO-like Transcription Factor Family AT1G75540 51.500 2.62e-60 189
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR Others Viun9g03890 zf-B_box 4.1e-08 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun9g03890 - - gmx:100800981 306.605
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Viun9g03890 9 43152891 43154237 Viun9g03890 9 43152891 43154237 ECH