Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun9g03889 ATGAAGATCCACTGTGATGTCTGTGACAAAATGGAAGCCACTGTTTTCTGTCCTGCAGATGAAGCTGCTCTTTGCCATGCCTGCGATCGCACCATTCACCACGCCAACAAGCTTGCAACCAAACACCCTCGTTTCTCTCTCATCTTCCCCACCTCCAAAGACTTTCCTCTCTGTGATATCTGCCAAGAGAAGCGTGCGTATCTCTTCTGCCAAGAGGACAGGGCCTTGTTCTGCAGGGAATGTGACCTTCCAATCCACAGAGCGAACGAACATACTCAGAAGCATAACAGGTTTCTTCTCACGGGGGTGAAGCTCTCCGCAAATTCTTTGGATTCTGCTTCCTCCTCCACCAATTGCACCGATACACTCACTGAAGGAAAAAACGCTCGATCTAGAATCAACACACCCAGATCAATTTCCAATGAAAATCTAAGCTCCTCTTGCAAGGCTGAAGACAACGTGGGAAGTGACACTGGCTCGGTTTCCACCAGCAGCATTTCTGAGTATTTGATCGAGACCATACCCGGTTACTGTTTCGAAGAACTTCTCGATGGTTCATTCCCACCTAATAATGGTTTCTGTAAGAAGCAGAACCATGGCTGCGCGTTTCAGGAGCAAGATCTAGTTCAAGTTAGGACGTGTTTGGTTGGTTGGAGTTTAGGAAATTCCAAATGGGGGGTGTTATGGTTGTGTTGTGCCGTTTCTTAA 708 0.4732 MKIHCDVCDKMEATVFCPADEAALCHACDRTIHHANKLATKHPRFSLIFPTSKDFPLCDICQEKRAYLFCQEDRALFCRECDLPIHRANEHTQKHNRFLLTGVKLSANSLDSASSSTNCTDTLTEGKNARSRINTPRSISNENLSSSCKAEDNVGSDTGSVSTSSISEYLIETIPGYCFEELLDGSFPPNNGFCKKQNHGCAFQEQDLVQVRTCLVGWSLGNSKWGVLWLCCAVS 235
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun9g03889 235 MobiDBLite consensus disorder prediction 126 161 - -
Viun9g03889 235 ProSiteProfiles Zinc finger B-box type profile. 53 100 IPR000315 GO:0008270
Viun9g03889 235 PANTHER B-BOX ZINC FINGER PROTEIN 22 1 203 - -
Viun9g03889 235 FunFam B-box zinc finger protein 21 1 98 - -
Viun9g03889 235 CDD Bbox1_BBX-like 5 47 - -
Viun9g03889 235 Pfam B-box zinc finger 56 92 IPR000315 GO:0008270
Viun9g03889 235 CDD Bbox1_BBX-like 57 100 - -
Viun9g03889 235 SMART bboxneu5 53 100 IPR000315 GO:0008270
Viun9g03889 235 SMART bboxneu5 4 47 IPR000315 GO:0008270
Viun9g03889 235 Gene3D Classic Zinc Finger 1 100 - -
Viun9g03889 235 ProSiteProfiles Zinc finger B-box type profile. 1 47 IPR000315 GO:0008270
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun9g03889 Viun-Chr9 43152888 43154270 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun9g03889 1 195 C2C2-CO-like Transcription Factor Family AT1G75540 51.208 1.57e-59 189
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR Others Viun9g03889 zf-B_box 5.6e-08 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun9g03889 - - gmx:100800981 317.005