Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun9g03887 ATGCAAAGAGGAACAACAGAAGTTGAAGAAGAAGTAGTGTCAAGGGGTTCTAAGTGCCAAGACTGTGGGAACCAAGCGAAGAAGGAATGTTCATATTCAAGGTGCAGAACTTGTTGCAAGAACAAAGGCTTTCACTGCCAAACCCATGTCAAGAGTACATGGACTCCTGTGGATAGGAGGCGCAACAAGGATCATCCACCTTCATCTTCGCACAACTTTCACACAGATAATATTCCTCAAAACCACAACCAGATCAATCCATATTCAGGTTTAGAGACGAAATTTCCTTGTGCTACGAATTCGATGGCTATGTTTCGGTGCGTTCAGGTTCGCTCCATGGATGATGCGGTAAATGAAATAGCGTATCAAACAAGTGTGAACATTGGGGGGCGTGTGTTTAGTGGAATACTATATGACGAAGGCCCTGAAGAAAGGTATAAGATTGTTAACAAGGGTGAGAGTTGCAGTGGTGTTGTTGATGAACAGCATGGTTCAATCCACAGTAGAGATAGCAGTGACCCTTCTTTTCCTCCACCACCATATCCATTTCCACTTGCTTCCTTCAGACCCGGTATGCCATATTTCCCATACCCAAGATCTTAA 603 0.4395 MQRGTTEVEEEVVSRGSKCQDCGNQAKKECSYSRCRTCCKNKGFHCQTHVKSTWTPVDRRRNKDHPPSSSHNFHTDNIPQNHNQINPYSGLETKFPCATNSMAMFRCVQVRSMDDAVNEIAYQTSVNIGGRVFSGILYDEGPEERYKIVNKGESCSGVVDEQHGSIHSRDSSDPSFPPPPYPFPLASFRPGMPYFPYPRS 200
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun9g03887 200 MobiDBLite consensus disorder prediction 173 190 - -
Viun9g03887 200 NCBIfam LRP1 C-terminal domain 94 142 IPR006511 -
Viun9g03887 200 MobiDBLite consensus disorder prediction 57 82 - -
Viun9g03887 200 Pfam Domain of unknown function (DUF702) 16 143 - -
Viun9g03887 200 PANTHER PROTEIN LATERAL ROOT PRIMORDIUM 1 13 151 IPR007818 GO:0003700|GO:0006355
Viun9g03887 200 NCBIfam putative zinc finger domain, LRP1 type 18 60 IPR006510 -
Viun9g03887 200 MobiDBLite consensus disorder prediction 159 190 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun9g03887 Viun-Chr9 43142132 43143452 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun9g03887 16 141 C2H2 Transcription Factor Family AT2G21400 51.429 1.13e-40 135
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF SRS Viun9g03887 DUF702 1.2e-41 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun9g03887 - - pvu:PHAVU_009G004300g 300.441