Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun9g03880 ATGACAACTTACTACCCATGTTCAAGTAATCAAAGGGGTGCGGTGCCTATGCTGTGTCTTAGGGAGCCTTTGCATAATTCGTATCCGGAGACACCAATTTTGCCAAGCAATATGACACTGTTGTATATGAACTCTGGTTCATATTCTGAAGCATTACCTGGAAATTCTCAGCAGCAAAGCAATTGCTTTGTGGTTCCATCAAATTCCACCGCTGAGCAGCAAGAAATATTGGCTAATATTGGTGGATACCAAATTGGGGTTCATGATTTCGGTAGAAGTGAGATGTTGGTAAGACAATCTATGGATGGACAGAACTTGCAGGGGCAGGGATTATCTCTAAGCCTTGGAACCCACATGCCCTCAGGAATTCAACTGCCTTCTGTCCATGATAGGAATCATTGCTCAAATTTTGATTCGTTCTTGGGTGGAAATCCATCGCTTTCAGCCAACGAGGTCTACCAAAATGGATCTTCTAGACATTCTGAAAATTTTCCTCCTGTGTTACCTGAAGCTAGTCATGATTTGAACAAAGCAGATTTTTCATTTCATGGAATTTCTAGTGTTGGAAGAACGGTTCCTAGCTCCAAATATCTCAAGGCAGTGCAACAACTGCTTGATGAAGTTGTTGATATCCGACAAGCTATGAAAAGACCTGATACAAGAAGTCACGGAACACATGAGAACTCTGCGAAGAATTCTAAGGAGGGTGGTGAGCTCCTGGAAAATGAACGGCCATCTACAAATGCTGTGCCTAATTCTCAAGCCTCAGCCAGTAACTCCTCTTGTGAGCTTTCACATGCTGAAAAACAAGATCTGCATAAGAAGTTAGCAAAGCTCCTGTCAATGTTGGATGAGGTTGACAGTAGGTACAAACAATATTACCAGAAGATGCAGAACGTGGTATCATCATTTGATGTGGTAGCAGGATGTGGGGCAGCTAAACCATACACGGCCCTTGCTCTACAAACCATTTCATGCCATTTTCGGTGTTTGCGTGATTCAATCACTGGTCAAATTCGTGCAACACAAAAGAGCCTTGGGGAGCACGACGCTTCTGAAAGTAATAAGGGAGTTGGAATGGCAAGACTAAAGTATGTGGACCATCAAGTTCGACAACAGAGGGCTCTTCAGCAGCTTGGTATGATGCAGCATGCATGGAGACCGCAAAGGGGGCTTCCAGAAAGCTCTGTTTCAATTCTCCGCTCATGGCTTTTTGAGCATTTCCTTCATCCATATCCAAAGGATTCGGAAAAGACCATGCTAGCAAGACAGACCGGCTTGACCCGAAGTCAGGTCTCAAATTGGTTCATAAATGCACGTGTGCGTCTATGGAAGCCTATGATTGAGGATATGTACAAGCAAGATGTTTCTGATGTGGACATGGACTCAACTTCTTCATCTGAAAATGTCTCCAAGGCAACAAGAAGTGATGTCAAGATCTCCAATGACACGGTTGATGATTCACAGCACTGTCAAAGTCCAATGTTAACCGATACAAATCATGGTGGTGGACAAGCTAAGGACCTTGGATACGATCAAGTTCTTGATACAAAAATCATGGCTTCCACTGGATTAACTAGTCATGAGGTTGAAACCGAACACAGGTCAGGAAAGCTGATAGAGGAGAAAAGGCCAAATTTTGATAATTGTGGTCTCTTCTCTGATAACATGGTGGTTCAATCTGATGGAGCTAGTAATGAAAGGTTTATGGCAGTTGGTTCAACGTGCCAAATGTCAGAGTTTGAGAGCTTCAAGTCAGGAAGTGGAGTGTCTCTAACATTGGGTTTACAGCACTGTGAAGGAGGTAATTTTTTGGCTGGTGAGAGCCATCTCAGTTTCGCAGCTGCAGCTTCTGCAGTTGGAGTACAGACAGCAGAACTTGAGCACGTTGGTGCTGGAAACCAGCGTCAGAGGTTCAGTTCACCTCATATGTTACATGATTTTGTTGTATGA 1953 0.4363 MTTYYPCSSNQRGAVPMLCLREPLHNSYPETPILPSNMTLLYMNSGSYSEALPGNSQQQSNCFVVPSNSTAEQQEILANIGGYQIGVHDFGRSEMLVRQSMDGQNLQGQGLSLSLGTHMPSGIQLPSVHDRNHCSNFDSFLGGNPSLSANEVYQNGSSRHSENFPPVLPEASHDLNKADFSFHGISSVGRTVPSSKYLKAVQQLLDEVVDIRQAMKRPDTRSHGTHENSAKNSKEGGELLENERPSTNAVPNSQASASNSSCELSHAEKQDLHKKLAKLLSMLDEVDSRYKQYYQKMQNVVSSFDVVAGCGAAKPYTALALQTISCHFRCLRDSITGQIRATQKSLGEHDASESNKGVGMARLKYVDHQVRQQRALQQLGMMQHAWRPQRGLPESSVSILRSWLFEHFLHPYPKDSEKTMLARQTGLTRSQVSNWFINARVRLWKPMIEDMYKQDVSDVDMDSTSSSENVSKATRSDVKISNDTVDDSQHCQSPMLTDTNHGGGQAKDLGYDQVLDTKIMASTGLTSHEVETEHRSGKLIEEKRPNFDNCGLFSDNMVVQSDGASNERFMAVGSTCQMSEFESFKSGSGVSLTLGLQHCEGGNFLAGESHLSFAAAASAVGVQTAELEHVGAGNQRQRFSSPHMLHDFVV 650
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun9g03880 650 PANTHER HOMEOBOX PROTEIN TRANSCRIPTION FACTORS 104 470 - -
Viun9g03880 650 SUPERFAMILY Homeodomain-like 387 452 IPR009057 -
Viun9g03880 650 MobiDBLite consensus disorder prediction 459 490 - -
Viun9g03880 650 Pfam Associated with HOX 192 336 IPR006563 -
Viun9g03880 650 MobiDBLite consensus disorder prediction 216 241 - -
Viun9g03880 650 MobiDBLite consensus disorder prediction 459 478 - -
Viun9g03880 650 MobiDBLite consensus disorder prediction 216 266 - -
Viun9g03880 650 CDD homeodomain 386 447 IPR001356 GO:0003677
Viun9g03880 650 SMART prehox3 186 337 IPR006563 -
Viun9g03880 650 SMART HOX_1 386 450 IPR001356 GO:0003677
Viun9g03880 650 ProSiteProfiles 'Homeobox' domain profile. 383 446 IPR001356 GO:0003677
Viun9g03880 650 Pfam Homeobox KN domain 403 442 IPR008422 GO:0003677|GO:0006355
Viun9g03880 650 Gene3D - 382 459 - -
Viun9g03880 650 MobiDBLite consensus disorder prediction 245 265 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun9g03880 Viun-Chr9 43100056 43103895 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun9g03880 27 650 Homeobox Transcription Factor Family AT4G34610 38.820 3.79e-123 374
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-BELL Viun9g03880 POX 3.4e-47 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun9g03880 - - vra:111240485 1192.18