Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun9g03841 ATGTTGCACTGTGCGAACACGTCGGGGAATCTGGCTGGGGACATGACAGTGTGGGAAAGACAGAGGGCGAGGATGAAGTGGCAAGAAGAGCAAGGCTACTTTTCTGCGTTCGACGCGCTTTTCTCTTCTTCTTCTTCTTCATCTCTTCATCTTCAAGATTCCTTCTTGCATCCTTCTGATTCCGGTTGTGCGCTTGGTGAAGTGGTGGCTCAGGCTCAGGCTCAACCTCGCTCGATGAATAAGCCTTCTGTTCATGGGTTTGATGCAAGTTCTTCAATTTTAAGGACTTTTAGTTGTCCACCCGCTTTGGTGGAGCCCGAGCCCGAGCCCGAGCCCAGGCCCACTGGCTCCTCGATTGGGAAAGAGAGTTCCAAGAAAAGGAAACCTGAGAAGCTTCACAATGCTAAGTTTGTTACAGAAAATGATATGAAAGACAAGAGGATCAAAGTGGGTGCCGACGATGAACAATCCAAAATCACAGGGAGCCCCAAGAGTCATAGCAACAAGAGAGAAACCTGTGCAGATACTTCAAATTCGAAGCAAAATTCCAAAGCATCCGAGGTTCAAAATCAAAAGCCTGATTACATTCACGTGCGAGCACGTCGCGGCCAAGCCACCGATAGCCATAGCTTAGCTGAAAGAGTTAGAAGGGAAAAAATTAGCGAGAGAATGAAGTATTTGCAAGATTTAGTACCTGGTTGCAACAAAATCACGGGAAAAGCGGGAATGCTTGATGAAATCATCAACTATGTTCAATCTCTTCAACGACAGGTTGAGTTTCTGTCAATGAAATTAGCTGCGGTGAACCCAAGGCTCGACCTCAGTATTGATGATCTGTTTGAAAAAGAGGTGTTTCCCTGTGCTGCGAATTTTCCAAACATTGGAATGTCATCAGATTTGACGAACTCTGGCTATGTTCAATTTAATTCACCACAACAAATGGTTTCGTATGGAGGATTAGACACGGTGATTAACCCTCCCTACATGGGGCTAAAAAGGAATGTATCGGTGCCTGAAACATATCTTCACTCGTCCTCTTTCACACAATTGCTTCCCTCCTCAACATGGGAAGGTGATTTCCAAAACCTTTGCAATTTGGATTTTGATCAAGTGCGAGCCACATCTTTCCCTTCTCATTTGTCCTCAGGACTGGTTGAAGCTGGCAATCATCTAAAGATGGAGATGTAG 1188 0.4537 MLHCANTSGNLAGDMTVWERQRARMKWQEEQGYFSAFDALFSSSSSSSLHLQDSFLHPSDSGCALGEVVAQAQAQPRSMNKPSVHGFDASSSILRTFSCPPALVEPEPEPEPRPTGSSIGKESSKKRKPEKLHNAKFVTENDMKDKRIKVGADDEQSKITGSPKSHSNKRETCADTSNSKQNSKASEVQNQKPDYIHVRARRGQATDSHSLAERVRREKISERMKYLQDLVPGCNKITGKAGMLDEIINYVQSLQRQVEFLSMKLAAVNPRLDLSIDDLFEKEVFPCAANFPNIGMSSDLTNSGYVQFNSPQQMVSYGGLDTVINPPYMGLKRNVSVPETYLHSSSFTQLLPSSTWEGDFQNLCNLDFDQVRATSFPSHLSSGLVEAGNHLKMEM 395
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun9g03841 395 Pfam Helix-loop-helix DNA-binding domain 208 255 IPR011598 GO:0046983
Viun9g03841 395 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 204 254 IPR011598 GO:0046983
Viun9g03841 395 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 202 272 IPR036638 GO:0046983
Viun9g03841 395 CDD bHLH_AtBPE_like 194 279 - -
Viun9g03841 395 MobiDBLite consensus disorder prediction 174 190 - -
Viun9g03841 395 MobiDBLite consensus disorder prediction 100 191 - -
Viun9g03841 395 PANTHER STEROL REGULATORY ELEMENT-BINDING PROTEIN 105 307 IPR024097 GO:0006355
Viun9g03841 395 Gene3D - 201 275 IPR036638 GO:0046983
Viun9g03841 395 SMART finulus 210 260 IPR011598 GO:0046983
Viun9g03841 395 MobiDBLite consensus disorder prediction 120 154 - -
Viun9g03841 395 FunFam Basic helix-loop-helix transcription factor 201 273 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun9g03841 Viun-Chr9 42974932 42977556 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun9g03841 14 314 Basic Helix-Loop-Helix Transcription Factor Gene Family AT4G34530 42.900 4.89e-60 196
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Viun9g03841 HLH 2.2e-06 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun9g03841 - - gmx:100798855 525.783
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Viun9g03841 9 42974932 42977556 Viun9g03841 9 42974932 42977556 ECH
Viun9g03841 9 42974932 42977556 Viun2g01983 2 28381085 28382684 ECH