Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun9g03838 ATGGGGATAGTGTGGTTCCGGTTGTTGTTGTTGCTGGTGGTGAGTCAGGTGACATTGGAGCAGATTGAGCCACTGAGTTCCTCCGAGGAGCGAGAATCGTTACTTGAACTGAGGGCTTCTCTGGGGTTGAGGAGCAAGGAATGGCCAAGAAAACCAGACCCTTGTTTGCTCTGGGTTGGCATCGCATGCCAGAATGGTCGAGTCGTTGGGATCAATATCTCTGGGTTTAAAAGAACGAGACTTGGGAGGATGAACCCGCAATTTGCAGTGGATGCTTTGGCCAATTTCACTCTCTTGGAGTCCTTCAATGCCTCTAATTTCCTCCTTCCTGGACCTATTCCTGATTGGCTTGGTCTCTCCCTTCCTTCTCTCAGAGTGCTTGATCTTCGTTCTTGTTCCATTGTGAATGCTATTCCCTCCACTCTCGGCAATTTGACCAACCTCTCCAGTCTCTATCTCTCCGACAACAACCTCATTGGGAATGTTCCGGAATCTTTGGGTCAACTCTCTGCCCTTTCGGTTCTTGATCTTTCCAGGAATTCTCTCGCTGGCTCCATACCAACGTCTTTTGCCTTTCTTGGGAATCTTTCTTCCCTTGACATGTCTGCCAATTTTTTGTCGGGGCCGATTCCCCCTGAAATAGGGTCTCTTTCAAGGTTACAGTACTTGAATCTTTCCAACAACGGACTTGCCACTCTGCCTACTCAATTGGGGGGTCTAACTAGCTTACTTGTCCTTGATCTTAGTCAGAATTCTTTTGCCAGTGGAGGACTGCCCCAGGATTTGGTTGGATTTAGGAACTTGCGGCAGATGATACTCTCAAACAGCATGCTCACCGGGTTTCTGCCCGGGAGATTGTTTTCTGGCTCATTGCAGTTGCAGTTCCTAGTGCTGAAGCAGAACAATTTTAGTGGTTCTTTGCCTGTTGAGTTGTGGTCTCTGCCAAGATTGAGCTTCCTTGATGTGTCTGCCAATAATTTCAGTGGTCAGCTTCCTAATTCAAGTTTATCTGCCAATGCTACTGTTGCAGTGCTCAATATTTCGCACAATAAGTTTTATGGAAACCTCACCTCAGCTTTAAGAAGGTTTGGGTTTATTGATCTTTCAAGCAACTATTTTGAGGGCAAGGTTCTGGATTTCATGCATAATGTGTCTCTAGATAGCAACTGTCTCCAGAACGCCACAGATCAGAGGTCAACGGCGGAATGTGCATCGTTTTATGCAGAGAGGGGGCTCAATTTTGATAATTTTGGACGCCCCAATACAACATCACCTCCTGCCTCCAAAAGCTCTGGGAAGAAGAGCAATAAGACTAAGATTATACTGGCTGCAGTCTTGGGTGGATTGGGTTTAATTGCACTTTTGGTGTTGCTAGTGGTTCTGTTGCTTCTGTGTGTTCGCAAGAGGGGTAACTCAAATCAGAGAGGAAACGGTGTGGGTCCTGCTCCTGTTGGTAGCAGTCCTCCAAACCCTGGTGTACCTATGGAATTTCCAAATGTAGGAGACTCATTTACATATCATCAGCTGCTCCAGGCAACAGGAGATTTCAATGATGCAAATCTTATCAAACATGGCCACACTGGGGACTTTTTCAATGGTGTTTTGGAAGGTGGGGTTCCTGTGGTCATCAAAAGGATCGACATGCGCTCGGCTAAAAAAGAGGCTTACCTGTCGGAGCTGGAATTCTTCAATAAGGTTTCTCATCAGAGATTCGTTCCATTGTTAGGTCATTGTTTAGAACATGAGAATGAGAAGTTTCTGGTTTATAAAAGCATGCCAAATGGGGACTTGTCTAATTGCTTGTACTACAAAAACACTACATCTGAAGATGGTACTTTGCAATCACTGGACTGGATAACCAGGTTAAAAATTGCTACTGGAGCCGCAGAGGCTCTGTCGTATCTACATCATGAATGTGTGCCACCAATTGTTCACAGGGATATTCAAGCAAGCAGTATACTTCTTGACGACAAATACGAAGTTCGGTTGGGGAGTCTGAGTGAAGCCTGTGCTCAAGAAGGTGACATTCATCAAAGTAAGATCACCCGGTTTCTGCGGTTGCCTCAGTCCTCTGAACAAGGCCCATCTGGTTATTCAACATCAATCTGTGCCTATGACGTTTATTGCTTGGGAAAAGTTTTACTTGAACTGGTGACGGGTAGGCTGGGAATGAGTGCAGCCAGTGAAGTCGAAGTAAAGGACTGGTTCGATCAGATTCTGCCTTACATTAATATGTACGAGAAAGAGCTCGTCACGAAAATCATCGATCCATCGATGGTTGTCGACGAAGATTTTCTAGAGGAAGTGTGGGCTATAGCCATTGTAGCCAGGTCTTGCTTGAACCCCAAACCCTCAAGGAGACCCCCAATGAGATATATTCTGAAGGCTTTGGAAAACCCTTTGAAGGTGGTGAGGGAAGAGAATTCCAGTTCTGCACGCCTCAGAGCAACCTCTTCCAGAGGTTCTTGGAACGCTGCCACTCTGTTTGGGAGTTGGCGTCAGAGTTCTTCTGATGTAACAGCAACTCCGGCAGCCTCTGGTGTGAAACTAGAAAGAGCGGGTAGTTTGAAACTGTCGGGAACCACCGGGTCGCGGTCGCAGTCGCAGGGTAGTTTCCACAATGGCGGCGGTGAGATTTCGTTGTCGCGGAGACGACACTCGAAGGAGATATTCCCGGAGCCGTCAGGGGTTGATGATGTAGAGAGGTTGGAGCTGGAATAA 2721 0.4675 MGIVWFRLLLLLVVSQVTLEQIEPLSSSEERESLLELRASLGLRSKEWPRKPDPCLLWVGIACQNGRVVGINISGFKRTRLGRMNPQFAVDALANFTLLESFNASNFLLPGPIPDWLGLSLPSLRVLDLRSCSIVNAIPSTLGNLTNLSSLYLSDNNLIGNVPESLGQLSALSVLDLSRNSLAGSIPTSFAFLGNLSSLDMSANFLSGPIPPEIGSLSRLQYLNLSNNGLATLPTQLGGLTSLLVLDLSQNSFASGGLPQDLVGFRNLRQMILSNSMLTGFLPGRLFSGSLQLQFLVLKQNNFSGSLPVELWSLPRLSFLDVSANNFSGQLPNSSLSANATVAVLNISHNKFYGNLTSALRRFGFIDLSSNYFEGKVLDFMHNVSLDSNCLQNATDQRSTAECASFYAERGLNFDNFGRPNTTSPPASKSSGKKSNKTKIILAAVLGGLGLIALLVLLVVLLLLCVRKRGNSNQRGNGVGPAPVGSSPPNPGVPMEFPNVGDSFTYHQLLQATGDFNDANLIKHGHTGDFFNGVLEGGVPVVIKRIDMRSAKKEAYLSELEFFNKVSHQRFVPLLGHCLEHENEKFLVYKSMPNGDLSNCLYYKNTTSEDGTLQSLDWITRLKIATGAAEALSYLHHECVPPIVHRDIQASSILLDDKYEVRLGSLSEACAQEGDIHQSKITRFLRLPQSSEQGPSGYSTSICAYDVYCLGKVLLELVTGRLGMSAASEVEVKDWFDQILPYINMYEKELVTKIIDPSMVVDEDFLEEVWAIAIVARSCLNPKPSRRPPMRYILKALENPLKVVREENSSSARLRATSSRGSWNAATLFGSWRQSSSDVTATPAASGVKLERAGSLKLSGTTGSRSQSQGSFHNGGGEISLSRRRHSKEIFPEPSGVDDVERLELE 906
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun9g03838 906 FunFam Leucine-rich repeat receptor protein kinase EMS1 187 285 - -
Viun9g03838 906 FunFam Probable LRR receptor-like serine/threonine-protein kinase At2g16250 27 186 - -
Viun9g03838 906 SUPERFAMILY L domain-like 86 411 - -
Viun9g03838 906 SMART LRR_typ_2 121 145 IPR003591 -
Viun9g03838 906 SMART LRR_typ_2 240 265 IPR003591 -
Viun9g03838 906 SMART LRR_typ_2 314 338 IPR003591 -
Viun9g03838 906 SMART LRR_typ_2 217 239 IPR003591 -
Viun9g03838 906 SMART LRR_typ_2 169 194 IPR003591 -
Viun9g03838 906 Gene3D Ribonuclease Inhibitor 235 287 IPR032675 -
Viun9g03838 906 Gene3D Ribonuclease Inhibitor 189 234 IPR032675 -
Viun9g03838 906 Pfam Leucine rich repeat 122 182 IPR001611 GO:0005515
Viun9g03838 906 Pfam Protein tyrosine and serine/threonine kinase 522 797 IPR001245 GO:0004672|GO:0006468
Viun9g03838 906 MobiDBLite consensus disorder prediction 879 906 - -
Viun9g03838 906 FunFam Putative LRR receptor-like serine/threonine-protein kinase 592 817 - -
Viun9g03838 906 Gene3D Transferase(Phosphotransferase) domain 1 592 819 - -
Viun9g03838 906 PANTHER LEUCINE RICH REPEAT FAMILY PROTEIN, EXPRESSED 195 798 - -
Viun9g03838 906 MobiDBLite consensus disorder prediction 857 876 - -
Viun9g03838 906 FunFam Probable LRR receptor-like serine/threonine-protein kinase At2g16250 289 419 - -
Viun9g03838 906 FunFam Predicted protein 486 591 - -
Viun9g03838 906 MobiDBLite consensus disorder prediction 856 906 - -
Viun9g03838 906 MobiDBLite consensus disorder prediction 473 494 - -
Viun9g03838 906 Gene3D Ribonuclease Inhibitor 27 188 IPR032675 -
Viun9g03838 906 ProSiteProfiles Protein kinase domain profile. 516 802 IPR000719 GO:0004672|GO:0005524|GO:0006468
Viun9g03838 906 ProSiteProfiles Leucine-rich repeat profile. 219 241 IPR001611 GO:0005515
Viun9g03838 906 SUPERFAMILY Protein kinase-like (PK-like) 488 797 IPR011009 -
Viun9g03838 906 Gene3D Ribonuclease Inhibitor 288 399 IPR032675 -
Viun9g03838 906 Gene3D Phosphorylase Kinase; domain 1 495 590 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun9g03838 Viun-Chr9 42934381 42939786 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun9g03838 30 689 Miscellaneous Gene Families AT2G16250 56.607 0.0 728
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-XIV Viun9g03838 PK_Tyr_Ser-Thr 5.2e-19 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun9g03838 - - gmx:100805769 1428.31