Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun9g03829 ATGGCTTCTGATTCCCCACCATCGTCGGACAATTCATCTCCTCCGCCACCACCGCCCGACAATTCATCTCCTCCCCCACCACCAGACAACTCATCTCCACCACCACCACCGCCGGACAATTCATCTCCTCGTCCACCGTCACAGGACAATTCACCACCTCCTCCCTCGTCAAGCGATAAGAAATCTCCGCCCCCGCCATCTAATTCCTCACCATCTACATCGCCACCACCTCCTCCTGATAAGAAATCAGGTAACCGCCGGTCATCGCCGCCCCCACATTCTGGCCATCAGTTTTCTCCTCCCCCACCTTCAAAGAACCGGTTGTCTCCACCCAAGTCATTATCTTCGAGGTCATCAGGAGACGGTGGAAGCCAATCATTGAGCACGCCAATTATAATAGCAATTGCAGCTGCAGCTGGGATTTTGCTCCTTCTCCTTCTCATGGTCATCTTTGCGTGTTCAAGAAGAAAAAGGAAATCTCAGTCACCCAATAATTACTACCATAATCAACCTAATGATGGGTTTCACAAAAACGAGTATGGGTACAACAGCAATAAGGTTGAGCACGTTATGCATATTCCTCCACATCCAAATCCACATTCACAAGATCCAAATCTATATCCACCACATCCACATCCACTTCCAGTTGGAAGTTGGTCAGCACCCCAGGGTGTTAGTTCTGACATGAGCAGTGCCAGTTACTCTGGGCCCCATGGTCCCGTTTTGCCACCGCCGCACCCCACGGTGGCCCTCGGATTCAACCAAAGCACCTTCACTTACGAGGAGCTCTCGGCTGCGACTGGTGGCTTTAGCCAACACAACCTGCTGGGCCAGGGTGGCTTTGGATACGTCCACAAAGGTGTTCTACCCAATGGCAAGGAAATTGCAGTGAAGAGCCTCAAAGCCACTAGTGGTCAAGGAGACAGAGAATTCCAAGCTGAGGTTGAAATCATCAGCCGCGTCCACCATCGCCATCTCGTCTCACTCGTCGGCTATTGCATCTCACAAGCCAACAAGCTCCTCGTTTATGAGTTTGTGCCTAACAATACCCTCGAATACCACCTTCATCGAAAGGTTCAACCTGTGATGGATTGGAATACCAGGCTCAAAATTGCGATTGGATCGGCTAAAGGACTTGCATATTTACATGAGGATTGTCACCCTCGTATCATTCACCGAGACATAAAGGGTGCAAACATTCTACTCGAAAACAACTTCGAAGCCAAAGTGGCAGATTTTGGGTTGGCAAAGATGAGTCAAGACACTAACACTCACGTTTCTACTCGTGTAATGGGAACATTCGGGTATTTGGCTCCAGAATATGCATCAAGCGGTAAGCTAACTGACAAATCTGATGTGTTCTCGTTCGGTATTATGCTTTTGGAGCTCATAACAGGTCGGGAACCTGTTGACAACACTGGGGAATATGAAGATAGTTTGGCCGACTGGGCTAGACCACTCTGTACAAAGGCAATGGAGGATGGAATTTTTGAAGGGCTGGTGGATCCACGTTTACAGGGTAATTACGACGAGCGCCAAATGTCTTGTATGGTGGCTTGTGCTGCATTTAGCGTAAGGTACTCTGCAAAGAAGCGGCCGAAAATGAGTCAGATTGTGAGAGTGCTGGAGGGTGATGTGTCAGTACAAGTGCTTGGTCACGAGGGAACGAAACCTGGACAAAGTACAGTGTTCGGCGGCGAAGGGGAATATAACGCGGAGAAATACGGTGCTGACATGATGAAGTTCAGAAAACTAGCATTACAGAGTGGCAGTGAGTTTAGTGCAACGAGTGAATATGGCATGAACCCTTCCACCACAAGCAGTGAACATTCTTCTGCTGAATATGTCAATGCCAGAAGGGTAGGAGCTCGAATGCACACTCCTTAA 1887 0.4897 MASDSPPSSDNSSPPPPPPDNSSPPPPPDNSSPPPPPPDNSSPRPPSQDNSPPPPSSSDKKSPPPPSNSSPSTSPPPPPDKKSGNRRSSPPPHSGHQFSPPPPSKNRLSPPKSLSSRSSGDGGSQSLSTPIIIAIAAAAGILLLLLLMVIFACSRRKRKSQSPNNYYHNQPNDGFHKNEYGYNSNKVEHVMHIPPHPNPHSQDPNLYPPHPHPLPVGSWSAPQGVSSDMSSASYSGPHGPVLPPPHPTVALGFNQSTFTYEELSAATGGFSQHNLLGQGGFGYVHKGVLPNGKEIAVKSLKATSGQGDREFQAEVEIISRVHHRHLVSLVGYCISQANKLLVYEFVPNNTLEYHLHRKVQPVMDWNTRLKIAIGSAKGLAYLHEDCHPRIIHRDIKGANILLENNFEAKVADFGLAKMSQDTNTHVSTRVMGTFGYLAPEYASSGKLTDKSDVFSFGIMLLELITGREPVDNTGEYEDSLADWARPLCTKAMEDGIFEGLVDPRLQGNYDERQMSCMVACAAFSVRYSAKKRPKMSQIVRVLEGDVSVQVLGHEGTKPGQSTVFGGEGEYNAEKYGADMMKFRKLALQSGSEFSATSEYGMNPSTTSSEHSSAEYVNARRVGARMHTP 628
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun9g03829 628 MobiDBLite consensus disorder prediction 595 628 - -
Viun9g03829 628 MobiDBLite consensus disorder prediction 94 108 - -
Viun9g03829 628 Pfam Protein tyrosine and serine/threonine kinase 273 484 IPR001245 GO:0004672|GO:0006468
Viun9g03829 628 MobiDBLite consensus disorder prediction 9 85 - -
Viun9g03829 628 FunFam proline-rich receptor-like protein kinase PERK1 248 345 - -
Viun9g03829 628 MobiDBLite consensus disorder prediction 197 216 - -
Viun9g03829 628 MobiDBLite consensus disorder prediction 158 178 - -
Viun9g03829 628 MobiDBLite consensus disorder prediction 220 234 - -
Viun9g03829 628 PANTHER PROLINE-RICH RECEPTOR-LIKE PROTEIN KINASE PERK4 138 585 IPR047117 -
Viun9g03829 628 MobiDBLite consensus disorder prediction 109 125 - -
Viun9g03829 628 MobiDBLite consensus disorder prediction 595 614 - -
Viun9g03829 628 FunFam Proline-rich receptor-like protein kinase PERK1 346 553 - -
Viun9g03829 628 CDD STKc_IRAK 276 544 - -
Viun9g03829 628 ProSiteProfiles Protein kinase domain profile. 270 548 IPR000719 GO:0004672|GO:0005524|GO:0006468
Viun9g03829 628 SMART serkin_6 270 517 IPR000719 GO:0004672|GO:0005524|GO:0006468
Viun9g03829 628 ProSitePatterns Serine/Threonine protein kinases active-site signature. 390 402 IPR008271 GO:0004672|GO:0006468
Viun9g03829 628 MobiDBLite consensus disorder prediction 1 125 - -
Viun9g03829 628 ProSitePatterns Protein kinases ATP-binding region signature. 276 298 IPR017441 GO:0005524
Viun9g03829 628 SUPERFAMILY Protein kinase-like (PK-like) 250 542 IPR011009 -
Viun9g03829 628 MobiDBLite consensus disorder prediction 194 237 - -
Viun9g03829 628 Gene3D Phosphorylase Kinase; domain 1 247 345 - -
Viun9g03829 628 Gene3D Transferase(Phosphotransferase) domain 1 346 551 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun9g03829 Viun-Chr9 42901438 42911113 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun9g03829 133 601 Trihelix Transcription Factor Family AT1G70460 51.037 9.76e-152 453
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_PERK-1 Viun9g03829 PK_Tyr_Ser-Thr 8.1e-47 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun9g03829 - - gmx:100806299 763.451