Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun9g03810 ATGGCTGCTTATAACAACAACAACAACCTCGAGGGAAGTGAAGAACCAGAAATAGGTGGTTTTCTTGCTCCGCGGGCTTTGTTCGGGCCAGCCCTACACCTCCAGGCCCAGAACCCGTCCCAACACACGGAGAACAACGATGGAGATGGGCCTCCCAACGCCGCCCGGCGCCCACGTGGACGGCCTCCGGGGTCCAAGAACAAGCCCAAGCCGCCCGTCATAGTCACGCGCGACAGCGCGAATGCCCTACACTCGCACGTGCTGGAGGTCTCCCTCGGCGCCGAGTTGATGGAGAGTCTCTCCACATACGCGTGCCGGCGAGGGAGAGGAGTTTGTGTGCTCAGTGGCACCGGCACGGTGGCCAACGTTGCACTCCGTCAACCGGCGGGAAGCGTGCTCACGTTCCCCGGACGGTTCGAGATAGTTTCCATAACGGGGACGGTTCTTCCTCCGCCGGCGCCGCCTGGTTCCGCCGGGTTGTCGGTTTATTTGTCTGGGGCGCAGGGTCAGGTTGTTGGGGGCATCGTGGTGGCCCCTCTGGTGGCTTCGAGCGACGTGGTGTTGGTGGCTGCTTCCTTCGCTAACGCCATGTTGGAAAGGTTACCCTTGTTGCCCTTGAATCACCACCATGATGATGACGATGAAGATCCACCTGCCGTCACCGGAAGCGGACACGTCGGAGATGGAAGGAACAACCCCTTCTCGTGGTGGTTGCAGAGTGAGCTATTTGAATTGGGTGGAAGTGGAAGTGCATCGTCTCATGCACCACCCAAACCTTCTCCTTTCTAG 789 0.5982 MAAYNNNNNLEGSEEPEIGGFLAPRALFGPALHLQAQNPSQHTENNDGDGPPNAARRPRGRPPGSKNKPKPPVIVTRDSANALHSHVLEVSLGAELMESLSTYACRRGRGVCVLSGTGTVANVALRQPAGSVLTFPGRFEIVSITGTVLPPPAPPGSAGLSVYLSGAQGQVVGGIVVAPLVASSDVVLVAASFANAMLERLPLLPLNHHHDDDDEDPPAVTGSGHVGDGRNNPFSWWLQSELFELGGSGSASSHAPPKPSPF 262
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun9g03810 262 ProSiteProfiles PPC domain profile profile. 80 218 IPR005175 -
Viun9g03810 262 CDD DUF296 86 193 IPR005175 -
Viun9g03810 262 Pfam Plants and Prokaryotes Conserved (PCC) domain 85 194 IPR005175 -
Viun9g03810 262 MobiDBLite consensus disorder prediction 30 74 - -
Viun9g03810 262 Gene3D - 84 210 - -
Viun9g03810 262 SUPERFAMILY AF0104/ALDC/Ptd012-like 80 202 - -
Viun9g03810 262 PANTHER AT-HOOK MOTIF NUCLEAR-LOCALIZED PROTEIN 15 42 221 IPR014476 GO:0003680
Viun9g03810 262 MobiDBLite consensus disorder prediction 34 48 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun9g03810 Viun-Chr9 42798208 42799538 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun9g03810 53 203 AT-hook Motif Nuclear Localized (AHL) Family AT1G76500 69.753 1.35e-62 197
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun9g03810 - - gmx:100778715 230.72