Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun9g03805 ATGGCGTACCACGGGATCCAGGGTCCAAGTTCGGGATCTAGTTCGAGTTCGGGCTTTCAGCTACTCAATTCTCCCTTCGGGGACACCACTTACACCAAAGTCTTCGTCGGAGGGTTGGCCTGGGAGACTCAGAGCGAAACCATGCGCCGCTACTTCGAGCAGTTCGGTGAGATTCTCGAGGCCGTAGTCATCACTGATAAGAACACAGGACGATCCAAGGGCTATGGTTTCGTGACTTTCCGGGATCCCGAGGCTGCAAGGAGAGCCTGTGCTGATCCAACTCCTGTTATTGATGGTAGAAGGGCGAACTGTAACTTGGCTTCACTTGGTCGGCCACGACCCCCTTTGCCTTATGGACGGGTAAGACCTGCCTCCCCTTATGTTGGAAGTGTGCAAACACCTCGCGGTGCTTATGTTGGAGGCTTTGGGTACCAGCAACCGCTTTCTTACAGCTATCAACAAGGATTAGTTTACCCTCCATATGGGTATACGGCATATGGACCAGAGTACATCTACCCACAGAGTTTGTATAACCCATACATGGGGCAACAGTACCTTCAGTTATATGGAGTGCCGGGAACAGTGAATACAACTATTTACCCATATGGACAATTGGGTCAGGCTGTACCTAGTGGTCATGGTTATTCAGCAATGCAGGGTTATACAGTACCAGGTCATCAGATTGTGCCCTATGGGGGATCTAATGTTAATGCCATAACAACTTCACCTATGCCTGCCATTCAAGCCTCATTTCCCAGTGGAATTGCTGCACCGGTTCCTGGCCAACCACAATTTATTGTTCCTGCTCCTTCTCCTCAGTTCATGCAAGGTGGCGGTCCTGACCAAACAGCTGGGTGA 858 0.507 MAYHGIQGPSSGSSSSSGFQLLNSPFGDTTYTKVFVGGLAWETQSETMRRYFEQFGEILEAVVITDKNTGRSKGYGFVTFRDPEAARRACADPTPVIDGRRANCNLASLGRPRPPLPYGRVRPASPYVGSVQTPRGAYVGGFGYQQPLSYSYQQGLVYPPYGYTAYGPEYIYPQSLYNPYMGQQYLQLYGVPGTVNTTIYPYGQLGQAVPSGHGYSAMQGYTVPGHQIVPYGGSNVNAITTSPMPAIQASFPSGIAAPVPGQPQFIVPAPSPQFMQGGGPDQTAG 285
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun9g03805 285 FunFam RNA-binding (RRM/RBD/RNP motifs) family protein 26 113 - -
Viun9g03805 285 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 32 109 IPR000504 GO:0003723
Viun9g03805 285 SMART rrm1_1 33 105 IPR000504 GO:0003723
Viun9g03805 285 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 34 90 IPR000504 GO:0003723
Viun9g03805 285 Gene3D - 9 117 IPR012677 -
Viun9g03805 285 CDD RRM_RBM24_RBM38_like 32 107 - -
Viun9g03805 285 PANTHER BOULE-RELATED 10 250 - -
Viun9g03805 285 SUPERFAMILY RNA-binding domain, RBD 31 143 IPR035979 GO:0003676
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun9g03805 Viun-Chr9 42780037 42784890 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun9g03805 21 108 C2H2 Transcription Factor Family AT2G19380 43.182 3.04e-17 79.7
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun9g03805 - - gmx:100782606 537.339