Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun9g03801 ATGAGCATGTCGGGATCTGACATGGTAACCAGGGACCAATTCTCAGTTGGGATGCACAACCCTCAATCCCAACCGCAACAACAACAACAACCTCAACTTCATCAAAACATGCGTATGGACTATGCTGCTGCTGACGGGGCCGCTGTTTTCGCCGCCCCTACCATCAACATCAACGGCGGAGAATCCTCTCCAGTCAGTGTGCCTCCGGGCTTGGGCCTGGGCCAGGCCCATCCCCAGGTCATGGTGGGTAACTCCACTGAGACACTCAAGAGAAAGAGGGGAAGGCCCAGAAAGTACGGGCCTGATGGTGGCATGGCTTTGAGCTTGAACACTACCCCTCCTCCTGGTGGCGCCGCCGTGCCTGTTGGCCATTCCGGTGGGGCATTTCCGGCGGCTCCTCTCTCTGATTCTGCCTCAGCCGGTACCGGGAAGCGTAGGGGCAGACCTCGTGGTTCTGTTAACAAGAATAAGAAAAGCTCAAAGTTTTCTGGGCCAGGAGGTTTCTTTACCCCGCATGTCATTACCGTGAAAGCTGGAGAGGATTTATCAGCAAGAATCATGTCAATTTCCCAGAGTGGTACAAGAAATGTTTGCATCTTAAGTGCAAATGGGTCCATATCTAATGTGACACTTCGACAGCCTGCATCGTCTGGTGGAACTGTGACTTACGAGGGGCGATTTGAGATCTTATCACTCGGTGGTTCATTGTTTCTTACTGAAAATGGTTCTCATGGCGAAAGAACTGGGGGCCTGAGTGTGTCCTTGTCAGGGCCAGACGGCCGCGTCTTGGGGGGTGGAGTCGCAGGTCTTTTGGTGGCTGCTTCCCCTGTTCAGATTGTTTTGGCTAGTTTTGTTTCCGATGGGAAGCAATCCAAGTCTGCAAAGCGGATGAGGAATGTATCTGCACCGGAAAAGGTTTCCACAGGTGGTGGTGGTGGTGGTGGCGGCGGCCAAAGCAGCTCACCGTCAAGGGGCACTCTGAGTGAGTCTTCAGGTGGGGTCGGGAGTGGGAGCCCACTGAACCAAAGCACAGGAGACTGCATGAACAATATGAACAGCAGCACCCCAACGGCAGGCTTTTCAGGCATGCCCTGGAAGTAA 1101 0.5386 MSMSGSDMVTRDQFSVGMHNPQSQPQQQQQPQLHQNMRMDYAAADGAAVFAAPTININGGESSPVSVPPGLGLGQAHPQVMVGNSTETLKRKRGRPRKYGPDGGMALSLNTTPPPGGAAVPVGHSGGAFPAAPLSDSASAGTGKRRGRPRGSVNKNKKSSKFSGPGGFFTPHVITVKAGEDLSARIMSISQSGTRNVCILSANGSISNVTLRQPASSGGTVTYEGRFEILSLGGSLFLTENGSHGERTGGLSVSLSGPDGRVLGGGVAGLLVAASPVQIVLASFVSDGKQSKSAKRMRNVSAPEKVSTGGGGGGGGGQSSSPSRGTLSESSGGVGSGSPLNQSTGDCMNNMNSSTPTAGFSGMPWK 366
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun9g03801 366 SMART AT_hook_2 90 102 IPR017956 GO:0003677
Viun9g03801 366 SMART AT_hook_2 143 155 IPR017956 GO:0003677
Viun9g03801 366 ProSiteProfiles PPC domain profile profile. 166 308 IPR005175 -
Viun9g03801 366 PANTHER AT-HOOK MOTIF NUCLEAR-LOCALIZED PROTEIN 9 26 345 IPR039605 GO:0003680
Viun9g03801 366 MobiDBLite consensus disorder prediction 292 366 - -
Viun9g03801 366 Gene3D - 171 299 - -
Viun9g03801 366 MobiDBLite consensus disorder prediction 1 36 - -
Viun9g03801 366 Pfam Plants and Prokaryotes Conserved (PCC) domain 171 285 IPR005175 -
Viun9g03801 366 MobiDBLite consensus disorder prediction 313 360 - -
Viun9g03801 366 MobiDBLite consensus disorder prediction 75 164 - -
Viun9g03801 366 CDD DUF296 170 284 IPR005175 -
Viun9g03801 366 SUPERFAMILY AF0104/ALDC/Ptd012-like 168 286 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun9g03801 Viun-Chr9 42761953 42766140 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun9g03801 81 366 AT-hook Motif Nuclear Localized (AHL) Family AT2G33620 50.671 6.37e-76 236
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun9g03801 - - pvu:PHAVU_009G008300g 558.91