Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun9g03795 ATGACTCGTCCCTTCAGATATTTAGGCGAGCGCGACTCGTCCAACGACTCCGCCGTGGTCGACTCCGACTTCGTCGTCATCCTCGCCGCCCTCCTCTGCGCACTCATCTGCGTCCTCGGTCTCGTCGCCGTCGCGCGCTGCGGCTGTCTCCGCCGCCTCCGCCGCTTCTCCTCTGCTCCCACTCCCCAGCCTCCTCCCGCTGCCGCCAACAAAGGCGTCAAGAAGAAGGTCCTCCGCTCCCTCCCCAAGCTCACCGCCACTGCCGAATCCGCCGTTAAATTCGCCGATTGCGCGATCTGCCTCTCGGAGTTCGCAGCCGGAGACGAAATCCGAGTGCTGCCTCAGTGCGGACATGGATTCCATGTTAGCTGCATCGACGCCTGGCTCAGATCGCACTCCTCGTGTCCGTCGTGCCGTCAGATTCTGGTGGTTTCTCGGTGCGACAAGTGCGGCGGGATCCCGGCCCCGTCGAGCTCCAGCTCCGCGCCCCCGCCGCAGTCGGAATCCGAGGCCAGATTCAAGGTGAGGGAGGATAACGGCAATAGGTTCTTGCCTTAG 558 0.638 MTRPFRYLGERDSSNDSAVVDSDFVVILAALLCALICVLGLVAVARCGCLRRLRRFSSAPTPQPPPAAANKGVKKKVLRSLPKLTATAESAVKFADCAICLSEFAAGDEIRVLPQCGHGFHVSCIDAWLRSHSSCPSCRQILVVSRCDKCGGIPAPSSSSSAPPPQSESEARFKVREDNGNRFLP 185
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun9g03795 185 CDD RING-H2_EL5-like 96 139 - -
Viun9g03795 185 SUPERFAMILY RING/U-box 79 145 - -
Viun9g03795 185 ProSiteProfiles Zinc finger RING-type profile. 97 139 IPR001841 -
Viun9g03795 185 MobiDBLite consensus disorder prediction 154 185 - -
Viun9g03795 185 MobiDBLite consensus disorder prediction 170 185 - -
Viun9g03795 185 Pfam Ring finger domain 96 139 IPR001841 -
Viun9g03795 185 PANTHER RING-H2 FINGER PROTEIN ATL61-RELATED-RELATED 14 151 - -
Viun9g03795 185 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 64 143 IPR013083 -
Viun9g03795 185 SMART ring_2 97 138 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun9g03795 Viun-Chr9 42728261 42729364 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun9g03795 5 185 C3H Transcription Factor Family AT1G20823 63.918 3.39e-69 207
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun9g03795 - - pvu:PHAVU_009G007400g 319.316