Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun9g03780 ATGAATTTGTTTCGGGTGGTTTGTTGGGTGGTGTGGTGTTTGGGATTTGTGGGGGCTGCAAACGTGACATCCTCGAGACCCGCCATCGTCAACATTGGAGCAATCTTCAACCTCGATTCCATTTTAGGGAAAGTGGCGAAAATCACATTGGAGGAAGCCGTGAAAGATGTTAACGCCGACACTAGCATTCTACATGGAACTAAAATTGTTCTCACTATGCAAAATTCCAATTACAGCGGTTTCTTAGGCATGGTTCAAGCTTTGCGGTTCATGGAGACTGATGTGGTTGCTATAATAGGACCACAATCTTCCGTGGTTGCACATATAATATCCCATGTTGCAAATGAATTACGAGTTCCTTTGTTGTCATTTGCCGCAACAGACCCTACCCTCACGTCGCTGCAGTTTCCTTTCTTTGTGAGGACAACGCAGAGTGATTTGTACCAAATGAAGGCTGTTGCTGAAATCATTGATTACTATGGTTGGAAGGAGGTGATTGCCATATACGTGGATGATGATTATGGACGGAATGGCGTGGCTGCTTTGGACGATGAACTAGCCGCCAGGCGCTGTAGAATCTCCTTCAAGGAAGGGATTAATTCCGGAACTGAAGTCAACCGGGGAGAAATTACGAGTTTGCTGGTGAAAGTGGCACTGATGCAGTCTCGAGTCATTGTTCTCCATGCACAAACTGATTACGGTTTTATGGTTTTCAATGTGGCGCGTTATCTTGGGATGACAAACAATGGCTATGTGTGGATAGTCACAGACTGGCTCTCTTCACTTCTGGATTCTGCTTCTCTCCCTTCAGAAAAAATGGATGTTCTCCAGGGAGTGCTTGTTCTGCGCCAGCACACACCTGATTCAGATAGAAAAAGGGCATTTGTGTCTCGGTGGAACAAGTTGACCGGTGGCTCTTTGGGGTTACATTCTTATGGCCTCTATGCTTATGATTCTGTGTGGCTTGTTGCACGGGCCATGGATGCTTTTTTCAGTCAGGGTGGGGTTGTTTCGTGCACGAACTACACAAGGTTAGGTGGTGGTGATAAGGGAGGTGATTTGAATCTTGATGCAATGAGCATTTTTGACAACGGAACGCTTCTGCTGAAGAACATAATGCAGAGTGATTTTGTTGGAGTTTCAGGTCGAATGAAATTCGAACCAGATCGATCTCTGGTTCATCCTGCCTATGACATCCTTAATGTGGTTGGAACTGGTCTTAGGAGGGTAGGTTACTGGTCCAACTATTCTGGTTTGTCGATTGTATCTCCTGAGATACTGTATGCAAAGCCACCTAATAGATCTAGTGCGAATCAGAAGCTTTACAGTGTGATATGGCCTGGAGAAACATTATCTAAACCCCGTGGATGGGTCTTCCCAAATAATGGTAGACAGTTGAGGATTGGTGTGCCTATTCGAGTCAGTTATCGTGAATTTGTGTCACCAGTGAAGGGAACTGATATGTTTAAAGGTTTTTGTGTTGATGTATTCACAGCAGCTCTGAACTTGTTGCCTTATGCAGTTCCCTACCAATTTGTTCCATTTGGAGACGGACACAAAAATCCAAGCTACACAGAACTTGTGCGCTTAATCACAACTGGTTACTTTGATGGTGCCATCGGTGACATCGCTATTGTCACAAACCGGACAAGGGTTGTGGATTTTACACAGCCATATGCAGCATCGGGACTTGTTGTGGTGGCCCCGTTCACGAAAATTAATTCTGGTGGTTGGGCTTTCCTGCAGCCGTTTACTCCTCTTATGTGGATTGTGACTGCATGTTTCTTTCTTTTCATTGGGATAGTTATATGGATTCTAGAACACAGGATCAACGATGAGTTCAGAGGTCCACCCAGACAGCAAATTATAACCTTGTTATGGTTTAGCCTTTCAACTCTGTTTTTTTCCCACAGAGAGAATACCATGAGTGGTCTTGGTCGGTTTGTGATGCTTCTATGGCTATTTGTGGTGTTGATCCTCACTTCCAGCTACACTGCAAGTTTAACATCCATACTCACAGTGCAGCAGTTATCTTCTCCTATCAGTGGAATAGAAAGCTTAAAGGCTGGTGATGAACCAATAGGATACCAAGTGGGTTCATTTGCAGAACATTACTTGACCCAAGATATTGGAATATCCAAATCCAGGCTTATTGCCCTCGGAACTCCAGAAGAATATGCTAAGGCCCTAAAGCTTGGTCCTAAAAGAGGAGGTGTTGCTGCTATTGTTGATGAACGACCTTATGTTGAAATCTTCTTATCAAGCCAGTGCACCTTCAGAATTGTTGGTCAGGAGTTCACCAGAAGTGGCTGGGGCTTTGCATTCCCTCGGGACTCCCCTTTGGCTGAGGATATGTCAACAGCCATTCTACAACTTTCTGAAACGGGTGATCTACAGCGGATTCATGACAAGTGGATGACACGAAGCTCTTGTAGTTTAGACAATGCTGAAATCGACTCAGATCGTCTTCAGCTTAAAAGCTTCTGGGGTCTCTTTCTCATTTGCGGGATAGCTTGCTTTGTTGCTCTTCTTTTGCACTTTTTGCAGATCATTTTCCAGTTATGGAAATCTCCTCCTTCTGAACCTGCTGCATCTTCTACTGCATGCTCAATTTCTGGTCGTTTTCAGAGATTTCTTTCGCTCATTGATGAGAAAGAAGATGCATCAAGGAGTAATGGAAGAAAGAGAGAAAGATCACTTGAAGAACAACTGGGAAGGCAATCAAAGAGGGTACAATTACAAACAGAAACGACCACCTAA 2760 0.4428 MNLFRVVCWVVWCLGFVGAANVTSSRPAIVNIGAIFNLDSILGKVAKITLEEAVKDVNADTSILHGTKIVLTMQNSNYSGFLGMVQALRFMETDVVAIIGPQSSVVAHIISHVANELRVPLLSFAATDPTLTSLQFPFFVRTTQSDLYQMKAVAEIIDYYGWKEVIAIYVDDDYGRNGVAALDDELAARRCRISFKEGINSGTEVNRGEITSLLVKVALMQSRVIVLHAQTDYGFMVFNVARYLGMTNNGYVWIVTDWLSSLLDSASLPSEKMDVLQGVLVLRQHTPDSDRKRAFVSRWNKLTGGSLGLHSYGLYAYDSVWLVARAMDAFFSQGGVVSCTNYTRLGGGDKGGDLNLDAMSIFDNGTLLLKNIMQSDFVGVSGRMKFEPDRSLVHPAYDILNVVGTGLRRVGYWSNYSGLSIVSPEILYAKPPNRSSANQKLYSVIWPGETLSKPRGWVFPNNGRQLRIGVPIRVSYREFVSPVKGTDMFKGFCVDVFTAALNLLPYAVPYQFVPFGDGHKNPSYTELVRLITTGYFDGAIGDIAIVTNRTRVVDFTQPYAASGLVVVAPFTKINSGGWAFLQPFTPLMWIVTACFFLFIGIVIWILEHRINDEFRGPPRQQIITLLWFSLSTLFFSHRENTMSGLGRFVMLLWLFVVLILTSSYTASLTSILTVQQLSSPISGIESLKAGDEPIGYQVGSFAEHYLTQDIGISKSRLIALGTPEEYAKALKLGPKRGGVAAIVDERPYVEIFLSSQCTFRIVGQEFTRSGWGFAFPRDSPLAEDMSTAILQLSETGDLQRIHDKWMTRSSCSLDNAEIDSDRLQLKSFWGLFLICGIACFVALLLHFLQIIFQLWKSPPSEPAASSTACSISGRFQRFLSLIDEKEDASRSNGRKRERSLEEQLGRQSKRVQLQTETTT 919
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun9g03780 919 PIRSF IGluLR_plant 1 919 IPR017103 -
Viun9g03780 919 FunFam Glutamate receptor 577 707 - -
Viun9g03780 919 Pfam Receptor family ligand binding region 51 404 IPR001828 -
Viun9g03780 919 Pfam Bacterial extracellular solute-binding proteins, family 3 486 807 IPR001638 -
Viun9g03780 919 SUPERFAMILY Periplasmic binding protein-like I 25 458 IPR028082 -
Viun9g03780 919 SMART GluR_14 467 808 IPR001320 GO:0015276|GO:0016020
Viun9g03780 919 FunFam Glutamate receptor 461 576 - -
Viun9g03780 919 Gene3D - 577 707 - -
Viun9g03780 919 FunFam Glutamate receptor 703 810 - -
Viun9g03780 919 FunFam Glutamate receptor 145 299 - -
Viun9g03780 919 Pfam Ligand-gated ion channel 808 839 IPR001320 GO:0015276|GO:0016020
Viun9g03780 919 Gene3D - 772 805 - -
Viun9g03780 919 MobiDBLite consensus disorder prediction 885 919 - -
Viun9g03780 919 Gene3D - 738 771 - -
Viun9g03780 919 SUPERFAMILY Periplasmic binding protein-like II 442 808 - -
Viun9g03780 919 CDD PBP1_GABAb_receptor_plant 31 422 IPR044440 -
Viun9g03780 919 CDD GluR_Plant 464 805 - -
Viun9g03780 919 PRINTS Metabotropic glutamate GPCR signature 149 165 IPR000337 GO:0004930|GO:0007186|GO:0016020
Viun9g03780 919 PRINTS Metabotropic glutamate GPCR signature 165 182 IPR000337 GO:0004930|GO:0007186|GO:0016020
Viun9g03780 919 PRINTS Metabotropic glutamate GPCR signature 130 149 IPR000337 GO:0004930|GO:0007186|GO:0016020
Viun9g03780 919 PRINTS Metabotropic glutamate GPCR signature 98 124 IPR000337 GO:0004930|GO:0007186|GO:0016020
Viun9g03780 919 MobiDBLite consensus disorder prediction 885 905 - -
Viun9g03780 919 Gene3D - 49 394 - -
Viun9g03780 919 Gene3D - 145 419 - -
Viun9g03780 919 Gene3D - 461 576 - -
Viun9g03780 919 PANTHER IONOTROPIC GLUTAMATE RECEPTOR 30 868 IPR015683 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun9g03780 Viun-Chr9 42680135 42684271 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun9g03780 9 910 Ion Channels AT1G42540 64.114 0.0 1262
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun9g03780 K05387 - gmx:102661260 1619.75