Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Viun9g03777 | ATGGAAGATGATAAATCAGGTGATTTGGATAATCTAAAACCAATGACCAAGGGTAAGCCTCCGCGGCATGTTTCGAGTTTGAGGCACAGCGTTAGCACCACCAGATTGATGGCAGTAGCAGATTTGAGTTTGGATGTGGGGGTTACTGGAAGCAAGTCATCTTCTGAAGAAAAGACGGAGTTTCTACCAATATTTCGGTCAGGAAGTTGTGCTGAAAGAGGACCTAAACAGTATATGGAAGACGAACACGTATGCATTGATGATCTTATTCAGCATATGGGTCCTGCCTCAACTATTCCTTTACCTGGAGCTTTTTATGGGGTGTTTGATGGCCATGGTGGTACAGACGCAGCTTTGTTCATAAGAAATAACATCCTCAAATTCATAGTTGAAGACTCCCATTTTCCAACCTGCGTGGGGCAGGCAATTACAAGTGCGTTTCTGAAAGCAGATTATGCATTTGCAGATTCTAGTTCTCTCGATATCTCCTCTGGGACCACTGCTTTAACTGCTCTTGTATCCGGAAGGAACATGATAGTTGCGAATGCCGGGGACTGCAGAGCTGTACTGGGGAGGCGAGGTAGAGCAATTGAGATGTCAAAAGACCAGAAACCAGATTGCATTTCGGAAAGGCTAAGGATTGAGAAACTTGGTGGAGTGGTGTACGATGGATACCTGAATGGGCAGTTATCTGTTTCCCGTGCCTTGGGAGACTGGCACATGAAGGGTCCGAAGGGTTCTGCGTGTCCCTTGAGTTCTGAGCCAGAGCTGCAGGAAATCATCCTCACTGAGGATGACGAGTTCTTGATCATGGGCTGTGACGGCCTGTGGGATGTAATGAGTAACCAATTTGCTGTGACAATGGCAAGGAAAGAACTAATGATACATAATGATCCTCAAAGGTGTTCAAGAGAACTGGTTAGAGAGGCTCTCAAGCGTAACTCCTGTGATAATTTGACTGTTATAGTCATATGTTTCTCCCCAGATCCTCCTCCTAGGATAGAGACACCTCCTTCTCGGGTAAGGAGGAGTATATCAGCAGAAGGTCTCAATTTACTTAAGGGTGTGTTGGATTCTTAG | 1080 | 0.4556 | MEDDKSGDLDNLKPMTKGKPPRHVSSLRHSVSTTRLMAVADLSLDVGVTGSKSSSEEKTEFLPIFRSGSCAERGPKQYMEDEHVCIDDLIQHMGPASTIPLPGAFYGVFDGHGGTDAALFIRNNILKFIVEDSHFPTCVGQAITSAFLKADYAFADSSSLDISSGTTALTALVSGRNMIVANAGDCRAVLGRRGRAIEMSKDQKPDCISERLRIEKLGGVVYDGYLNGQLSVSRALGDWHMKGPKGSACPLSSEPELQEIILTEDDEFLIMGCDGLWDVMSNQFAVTMARKELMIHNDPQRCSRELVREALKRNSCDNLTVIVICFSPDPPPRIETPPSRVRRSISAEGLNLLKGVLDS | 359 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Viun9g03777 | 359 | ProSitePatterns | PPM-type phosphatase domain signature. | 105 | 113 | IPR000222 | GO:0043169 | |
| Viun9g03777 | 359 | Gene3D | - | 44 | 329 | IPR036457 | - | |
| Viun9g03777 | 359 | FunFam | Probable protein phosphatase 2C 22 | 51 | 329 | - | - | |
| Viun9g03777 | 359 | MobiDBLite | consensus disorder prediction | 1 | 17 | - | - | |
| Viun9g03777 | 359 | SUPERFAMILY | PP2C-like | 60 | 327 | IPR036457 | - | |
| Viun9g03777 | 359 | ProSiteProfiles | PPM-type phosphatase domain profile. | 66 | 326 | IPR001932 | - | |
| Viun9g03777 | 359 | SMART | PP2C_4 | 56 | 324 | IPR001932 | - | |
| Viun9g03777 | 359 | SMART | PP2C_SIG_2 | 81 | 326 | IPR001932 | - | |
| Viun9g03777 | 359 | MobiDBLite | consensus disorder prediction | 1 | 28 | - | - | |
| Viun9g03777 | 359 | CDD | PP2Cc | 65 | 326 | IPR001932 | - | |
| Viun9g03777 | 359 | Pfam | Protein phosphatase 2C | 67 | 318 | IPR001932 | - | |
| Viun9g03777 | 359 | PANTHER | PROTEIN PHOSPHATASE 2C | 54 | 324 | IPR015655 | GO:0004722|GO:0006470 |
Duplication type information
| Select | Gene | Chromosome | Start | End | Duplicated_type |
|---|---|---|---|---|---|
| Viun9g03777 | Viun-Chr9 | 42671286 | 42674708 | Dispersed/Wgd |
Functional genes information
| Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
|---|---|---|---|---|---|---|---|---|
| Viun9g03777 | 2 | 358 | PP2C-type Phosphatase Gene Family | AT2G33700 | 74.022 | 0.0 | 543 |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Viun9g03777 | K14803 | - | gmx:100778015 | 663.299 |