Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun9g03769 ATGATGGCTGCGAGCTGGGATGGAAGTAATGACCCTGGCAGCCAGTCAGATGATAGTTTTCATTTTGAGAGGTTGCACATTGAGCCTCTGTATGATGCTTTTGTGTGTCCATTGACGAAGCAAGTGATGCGTGATCCTGTTACTTTAGAAAATGGACAGACTTTTGAACGTGAAGCAATTGAAAAATGGTTCAAGGAGTGTAGGGAGAGTGGGAGGAGACTGGTTTGCCCTTTGACTCTTCAGGAGTTAAGAAGCGCAGAGCTGAATCCAAGCATGGCTTTGCGTAACACCATTGAAGAGTGGACTGCGAGAAATGAAGCTGCACAGCTGGACATAGCTCGCAGATCGTTGAACATGGCGAGTCCAGAGAGTGAAACTCTTCAGGCCTTAAAGTATGTGCAGTACATCTGTCAAAGAAGTCGATCAAACAAACACACTGTCCGCAATGCAGGGCTTATACCAATGATTGTTGACATGCTGAAGAGTGGAAGCCGTAAGGTTCGATGTAGAGCTCTGGAAACCCTTAGAGTGGTGGTAGAAGAAGATGATGAGAACAAGGAATTGTTGGCCGAAGGGGATACTGTGCGTACTATAGTGAAATTCCTTTCCCACGAGCTTTCTAAGGAGAGAGAGGAGGCTGTGTCCTTGCTTTACGAACTCTCGAAGTCTTGTACCCTCTGTGAGAAGATTGGTTCAATCAACGGAGCCATTCTAATATTAGTAGGGATGACAAGCAGCAATTCAGAAGATCTTCTCACTGTTGGGAAGGCTGAGGAAACATTGTCCAATCTGGAGAGGTGTGAGGCTAATGTTCGGCAGATGGCTGAATGTGGTAGATTGCAGCCTCTTCTTACCCAACTTCTTGAAGGTCCACCAGAAACCAAACTCTCCATGGCTGGATTCCTTGGTGAGCTGGTTTTAAACAATGATGTTAAAGTTCTTGTTGCAAGAACTGTGGGTTCATCTCTGATCAATATAATGAAAAGTGGTAACATGCAATCAAGAGAAGCTGCACTGAAGGCACTAAATCAGATATCATCATGTGACCCAAGTGCAAAGATATTAATAGAGGCTGGAATACTTTCTCCTCTTGTCAATGACCTTTTTGCAGTAGGTCCTAACCTGCTTCCCACACGGTTGAAAGAGATCTCTGCTACCATTCTTGCCAGTGTTGTAAACTCCGGAGAAGACTTCTATTCCATTTCATTTGGACCTGATCACCAAACTCTGGTCTCAGAGGATATAGTTCGTAATCTACTCCATCTTATAAGCAACACTGGTCCAGCAATAGAGTGCAAACTACTACAAGTTCTTGTTGGACTTACCACTTCTCCAACCACAGTTCTCAGTGTTGTGGCTGCTATCAAAAGCTCTGGTGCCACAATCAGTTTAGTCCAGTTCATTGAAGCACCACAGAAAGATCTGCGTCTGGCTTCCATAAAACTTCTTCAGAATTTGTCTCCTCACATGGGTCAGGAACTAGCCGATGCACTACGCGGCTCGGTCGGACAGCTTGGAAGTCTAATAAAAGTCATATCAGAAAATACAGGGATCAGCGAAGAGCAGGCGGCGGCGGTCGGCCTCTTAGCCGACCTACCGGAAAGGGATTTAGGCCTCACAAGACAGCTACTAGATGAAGGTGCCTTTGTGATGGTCATTTCCAGGGTGATTGCCATCAGGCAGGGAGAGATCAGAGGCACTCGCTTCATGACACCATTTCTTGAAGGGCTTGTGAAGATTGTTGCTAGGGTTACCTATGTCTTGGCCGAAGAGCCGGATGCCATTGCACTCTGCCGTGACCACAACCTTGCTGCACTCTTCATTGACCTGCTTCAGTCCAATGGACTTGACAACGTGCAGATGGTTTCTGCCACAGCTCTGGAGAATCTATCAGTAGAGTCAAAAAACCTAACCAAATTACCGGAGATGCCGCCGCCCGGTTTTTGCGCCTCGGTGTTTTCATGCTTCAGCAAGCAGCCGGTGATCAGTGGATTGTGCAGGCTCCACAGAGGAATCTGCTCTTTGAAGGAAACATTTTGCCTTTATGAAGGGCAAGCAGTGCTTAAGCTAGTAGGGCTACTGGACCACACAAATGTGAATGTTGTTGAGGCAGCACTTGCTGCATTATCAACTTTGATAGATGATGGAGTAGACATAGAACAAGGTGTGGCGATTTTGGTTGAAGCAGAGGGAGTGAAGCCTATACTTGATGTTCTACTTGAGAAGAGAACAGAGACATTGAGAAGAAGAGCGGTTTGGGCTGTGGAGAGACTGTTAAGAACAGATGACATAGCCTGTGAGGTTTCTGCAGACCAGAATCTGAGCACTGCACTTGTGGATGCATTCCAACATGGTGATTATCGAACTAGACAGACCGCTGAGCGTGCTCTCAAACATGTTGACAAGATACCAAACTTCTCAGGAATCTTTCAGAACATAGGATGA 2445 0.4613 MMAASWDGSNDPGSQSDDSFHFERLHIEPLYDAFVCPLTKQVMRDPVTLENGQTFEREAIEKWFKECRESGRRLVCPLTLQELRSAELNPSMALRNTIEEWTARNEAAQLDIARRSLNMASPESETLQALKYVQYICQRSRSNKHTVRNAGLIPMIVDMLKSGSRKVRCRALETLRVVVEEDDENKELLAEGDTVRTIVKFLSHELSKEREEAVSLLYELSKSCTLCEKIGSINGAILILVGMTSSNSEDLLTVGKAEETLSNLERCEANVRQMAECGRLQPLLTQLLEGPPETKLSMAGFLGELVLNNDVKVLVARTVGSSLINIMKSGNMQSREAALKALNQISSCDPSAKILIEAGILSPLVNDLFAVGPNLLPTRLKEISATILASVVNSGEDFYSISFGPDHQTLVSEDIVRNLLHLISNTGPAIECKLLQVLVGLTTSPTTVLSVVAAIKSSGATISLVQFIEAPQKDLRLASIKLLQNLSPHMGQELADALRGSVGQLGSLIKVISENTGISEEQAAAVGLLADLPERDLGLTRQLLDEGAFVMVISRVIAIRQGEIRGTRFMTPFLEGLVKIVARVTYVLAEEPDAIALCRDHNLAALFIDLLQSNGLDNVQMVSATALENLSVESKNLTKLPEMPPPGFCASVFSCFSKQPVISGLCRLHRGICSLKETFCLYEGQAVLKLVGLLDHTNVNVVEAALAALSTLIDDGVDIEQGVAILVEAEGVKPILDVLLEKRTETLRRRAVWAVERLLRTDDIACEVSADQNLSTALVDAFQHGDYRTRQTAERALKHVDKIPNFSGIFQNIG 814
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun9g03769 814 PANTHER RING-TYPE E3 UBIQUITIN TRANSFERASE 23 810 - -
Viun9g03769 814 ProSiteProfiles U-box domain profile. 29 108 IPR003613 GO:0004842|GO:0016567
Viun9g03769 814 Pfam U-box domain 32 106 IPR003613 GO:0004842|GO:0016567
Viun9g03769 814 Gene3D - 573 804 IPR011989 -
Viun9g03769 814 Gene3D - 320 487 IPR011989 -
Viun9g03769 814 Gene3D - 231 319 IPR011989 -
Viun9g03769 814 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 31 108 IPR013083 -
Viun9g03769 814 SMART arm_5 140 180 IPR000225 GO:0005515
Viun9g03769 814 SMART arm_5 673 714 IPR000225 GO:0005515
Viun9g03769 814 SMART arm_5 348 393 IPR000225 GO:0005515
Viun9g03769 814 SMART arm_5 267 307 IPR000225 GO:0005515
Viun9g03769 814 SMART arm_5 182 222 IPR000225 GO:0005515
Viun9g03769 814 SMART arm_5 308 347 IPR000225 GO:0005515
Viun9g03769 814 SMART arm_5 591 632 IPR000225 GO:0005515
Viun9g03769 814 SMART arm_5 718 760 IPR000225 GO:0005515
Viun9g03769 814 SUPERFAMILY RING/U-box 24 111 - -
Viun9g03769 814 Gene3D - 109 230 IPR011989 -
Viun9g03769 814 SMART Ubox_2 33 101 IPR003613 GO:0004842|GO:0016567
Viun9g03769 814 SUPERFAMILY ARM repeat 120 445 IPR016024 -
Viun9g03769 814 CDD RING-Ubox_PUB 31 88 IPR045210 -
Viun9g03769 814 SUPERFAMILY ARM repeat 459 811 IPR016024 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun9g03769 Viun-Chr9 42654221 42658668 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun9g03769 3 814 U-box Gene Family AT1G76390 65.111 0.0 1036
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun9g03769 - - gmx:100789746 1454.88