Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun9g03763 ATGAAAGGAGGCAAGTCAAAAACCGAATCTAAGAGAGGCGATGCCAAACTTGCTGTGAATAAGAAGGGTGCGCCAGCCAAGGCCAGGAAACCAGCAGGCAAGGGCAAGGCTGCGAAAGACCCTAACAAGCCAAAGAGGCCTCCCAGTGCTTTCTTTGTTTTCATGGAGGAGTTTAGGAAACAATTTAACAAAGAACATCCTGACAACAAAGCCGTGTCTGCTGTGGGAAAAGCTGCTGGAGCAAAATGGAAGTCTATGTCTGATGCTGAAAAAGCACCATATGTGGCAAAGTCTGAGAAACGAAAGGTGGAGTACGAGAAAAGCATGAGAGCCTACAACAAGAAACAGGCGGAAGGTCCTACTGGTGGAGATGAAGAAGAGTCTGAGAAGTCAGTATCCGAGGTGAATGATGATGATGATGATGATGAGGGCAGTGCCGAGGAGGAAGATGATGACTAG 459 0.4749 MKGGKSKTESKRGDAKLAVNKKGAPAKARKPAGKGKAAKDPNKPKRPPSAFFVFMEEFRKQFNKEHPDNKAVSAVGKAAGAKWKSMSDAEKAPYVAKSEKRKVEYEKSMRAYNKKQAEGPTGGDEEESEKSVSEVNDDDDDDEGSAEEEDDD 152
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun9g03763 152 PANTHER HIGH MOBILITY GROUP B PROTEIN 4-RELATED 1 148 IPR031061 -
Viun9g03763 152 MobiDBLite consensus disorder prediction 93 129 - -
Viun9g03763 152 Pfam HMG (high mobility group) box 44 113 IPR009071 -
Viun9g03763 152 Gene3D High mobility group box domain 19 123 IPR036910 -
Viun9g03763 152 MobiDBLite consensus disorder prediction 130 152 - -
Viun9g03763 152 CDD HMG-box_AtHMGB1-like 45 105 - -
Viun9g03763 152 Coils Coil 95 115 - -
Viun9g03763 152 SMART hmgende2 43 114 IPR009071 -
Viun9g03763 152 SUPERFAMILY HMG-box 32 118 IPR036910 -
Viun9g03763 152 ProSiteProfiles HMG boxes A and B DNA-binding domains profile. 44 113 IPR009071 -
Viun9g03763 152 MobiDBLite consensus disorder prediction 1 50 - -
Viun9g03763 152 MobiDBLite consensus disorder prediction 1 18 - -
Viun9g03763 152 MobiDBLite consensus disorder prediction 78 152 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun9g03763 Viun-Chr9 42612444 42614594 Dispersed/Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR HMG Viun9g03763 HMG_box 3.1e-24 CL0114
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun9g03763 K25507 - gmx:100500173 205.297
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Viun9g03763 9 42612444 42614594 Viun9g03763 9 42612444 42614594 ECH