Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun9g03760 ATGAGTTGTTTTTCGTGCTTTGTTTCTCGCCGGAAAGATGTGAGGAGGGTTGAAATTGACAATGGCACTCGATCTGCTACAGCTGCATCCTCAGAGGGTGAAAGGAAGAGAGAATCCTCAGAGGCAAAGGGGAAGAGTGTGAGTAGTGGTAAAGGAAGTACTGCAGCGGCTAGTTTTGGTTTTCGCGAACTAGCTGCGGCGACGAGGGGTTTCAAGGAAGTGAACTTAATTGGGGAAGGTGGTTTTGGAAGGGTTTACAAGGGTCGACTTTCAACGGGCGAGCTTGTTGCCGTGAAACAATTGAGTCATGATGGTCGACAAGGTTTTCAGGAATTTGTGACGGAGGTACTTATGTTGAGCCTGCTGCACCATTCTAATCTTGTGAAGTTAATCGGCTACTGCACGGATGGAGATCAGAGGCTTTTGGTTTATGAGTACATGCCCATGGGTTCACTGGAAGATCATCTTTTTGATCCGACCCAAGACAAAGAACCCCTAAGTTGGAGTTCTCGAATGAAGATTGCTGTTGGAGCTGCTCGTGGCCTCGAGTATCTCCATTGTAAAGCAGATCCACCTGTTATTTACAGAGACTTGAAATCTGCTAACATCTTGTTAGATAATGAATTCAACCCAAAACTATCAGATTTTGGGCTTGCTAAACTTGGACCTGTTGGAGACAATACCCATGTTTCAACCAGAGTGATGGGAACATATGGCTACTGTGCGCCTGAGTATGCCATGAGTGGCAAATTAACTCTTAAATCTGATATCTACAGCTTTGGTGTGGTTTTGTTGGAGTTGATCACTGGACGTAGAGCAATAGATGCCACTAGAAAGCCAGGAGAGCAGAACTTGGTTTCGTGGTCTCGTCCATATTTTAGTGACCGGAGAAAGTTTGTGCATATGGTTGACCCTCTTTTACAAGGCAACTTCCCCTTGCGCTGTTTGCATCAGGCAATTGCTATAACTGCTATGTGTCTCCAGGAGCAACCAAAATTCCGTCCACTTATTGGTGATATTGTTGTTGCACTGGAATACCTAGCTTCTCAGAGTATTACTGAAGTGCATAGATATGGTGGGCGCAGCTCACCACAACAACCATCATCTGAAATCGACAGAAATTAA 1125 0.4507 MSCFSCFVSRRKDVRRVEIDNGTRSATAASSEGERKRESSEAKGKSVSSGKGSTAAASFGFRELAAATRGFKEVNLIGEGGFGRVYKGRLSTGELVAVKQLSHDGRQGFQEFVTEVLMLSLLHHSNLVKLIGYCTDGDQRLLVYEYMPMGSLEDHLFDPTQDKEPLSWSSRMKIAVGAARGLEYLHCKADPPVIYRDLKSANILLDNEFNPKLSDFGLAKLGPVGDNTHVSTRVMGTYGYCAPEYAMSGKLTLKSDIYSFGVVLLELITGRRAIDATRKPGEQNLVSWSRPYFSDRRKFVHMVDPLLQGNFPLRCLHQAIAITAMCLQEQPKFRPLIGDIVVALEYLASQSITEVHRYGGRSSPQQPSSEIDRN 374
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun9g03760 374 MobiDBLite consensus disorder prediction 30 44 - -
Viun9g03760 374 PANTHER OS07G0668900 PROTEIN 3 353 - -
Viun9g03760 374 Gene3D Transferase(Phosphotransferase) domain 1 147 360 - -
Viun9g03760 374 ProSitePatterns Serine/Threonine protein kinases active-site signature. 193 205 IPR008271 GO:0004672|GO:0006468
Viun9g03760 374 SUPERFAMILY Protein kinase-like (PK-like) 54 345 IPR011009 -
Viun9g03760 374 MobiDBLite consensus disorder prediction 19 53 - -
Viun9g03760 374 Gene3D Phosphorylase Kinase; domain 1 28 146 - -
Viun9g03760 374 ProSiteProfiles Protein kinase domain profile. 71 347 IPR000719 GO:0004672|GO:0005524|GO:0006468
Viun9g03760 374 SMART serkin_6 71 347 IPR000719 GO:0004672|GO:0005524|GO:0006468
Viun9g03760 374 Pfam Protein kinase domain 71 336 IPR000719 GO:0004672|GO:0005524|GO:0006468
Viun9g03760 374 CDD STKc_IRAK 77 345 - -
Viun9g03760 374 FunFam Serine/threonine-protein kinase PBS1 147 360 - -
Viun9g03760 374 ProSitePatterns Protein kinases ATP-binding region signature. 77 99 IPR017441 GO:0005524
Viun9g03760 374 FunFam probable serine/threonine-protein kinase RLCKVII 43 146 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun9g03760 Viun-Chr9 42578358 42582822 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun9g03760 1 370 Glycoside Hydrolase AT3G07070 58.639 9.77e-154 437
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RLCK-VIIa-1 Viun9g03760 Pkinase 6.5e-47 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun9g03760 - - gmx:100796595 602.823