Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun9g03759 ATGGGAAGCTGTTTTGGAAAGACAGATGATGGTAACAAAACTGATCAGTACAGAATTCGCACCATCCATAAAACTCCCCCAGGGAGACCAGAGAAGAAAGAAACGGTGGAAGGAAGAAAGGAAGAGGATTTGAGGATACTTATAAATTACACGTTGGATGATTTGAAAAGTGCGACAAGAAACTTCAGACCAGACACGGTCCTAGGTGAAGGTGGTTTTGGACGTGTTTTCAAAGGGTGGATTGATAAGAACACTTTCAAACCTTCGAGAGTTGGAGTTGGAATCCCCGTTGCGGTGAAGAAATCTAACCCCGATAGCCTTCAGGGTCTGCAAGAGTGGAAGAGTGAAGTCCAATTTTTGGGGAAGCTCTCTCATCCAAACCTAGTTAAACTAATTGGCTACTGCTGGGAGGATAATCAATTCCTTCTGGTGTACGAATACATGCAAAAGGGAAGCCTTGAAAGCCACCTGTTCAGAAGAGGTCCAGAACCACTTTCATGGGATATAAGACTGAAGATAGCCATAGGAGCTGCCAGAGGCCTAGCTTTCTTGCACACATCAGAGAAATCTGTCATATATAGAGACTTCAAATCCTCAAACATTTTGCTAGATGGGGATTTCAATGCGAAGCTATCAGATTTTGGGCTGGCAAAGCTTGGCCCCGTCAATGGTAAATCCCACGTAACCACGCGGGTCATGGGCACCTATGGTTACGCTGCACCTGAATACATGGCCACAGGGCACCTGTATGTTAAAAGCGACGTGTACGGATTCGGCGTTGTTCTGCTAGAAATGCTAACGGGCAGAGCAGCTCTGGACACAACCCTACCCACAGATATGCAGAATTTGGTGCAGTTCAGTTTGTCATCTCTGAATGACAAAAAGAGACTGCAAAAGATAATGGACCCAAACATGGACGACCAATATTCACCAAGGGCTGCGTTTCACATAGCCCAAGTTATCCTCAAATGTTTAGAATCTGACCACAGAAAACGACCCTCCATGGTGGAGGTTTTGGCAAACTTAGAAAAAGCACAAACTATAAAGTACAAACCCAAAGGGAACAGAGCCTCTGCAATTCGTCAAACATCAGACCTGCATCACCCGAATTACCCACGTTCTTCACCGCCACCGTTTCACTACAACAACAACGATTAG 1158 0.4525 MGSCFGKTDDGNKTDQYRIRTIHKTPPGRPEKKETVEGRKEEDLRILINYTLDDLKSATRNFRPDTVLGEGGFGRVFKGWIDKNTFKPSRVGVGIPVAVKKSNPDSLQGLQEWKSEVQFLGKLSHPNLVKLIGYCWEDNQFLLVYEYMQKGSLESHLFRRGPEPLSWDIRLKIAIGAARGLAFLHTSEKSVIYRDFKSSNILLDGDFNAKLSDFGLAKLGPVNGKSHVTTRVMGTYGYAAPEYMATGHLYVKSDVYGFGVVLLEMLTGRAALDTTLPTDMQNLVQFSLSSLNDKKRLQKIMDPNMDDQYSPRAAFHIAQVILKCLESDHRKRPSMVEVLANLEKAQTIKYKPKGNRASAIRQTSDLHHPNYPRSSPPPFHYNNND 385
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun9g03759 385 ProSitePatterns Serine/Threonine protein kinases active-site signature. 191 203 IPR008271 GO:0004672|GO:0006468
Viun9g03759 385 Gene3D Phosphorylase Kinase; domain 1 47 147 - -
Viun9g03759 385 Gene3D Transferase(Phosphotransferase) domain 1 148 365 - -
Viun9g03759 385 FunFam Serine/threonine-protein kinase BIK1 30 147 - -
Viun9g03759 385 MobiDBLite consensus disorder prediction 362 385 - -
Viun9g03759 385 SUPERFAMILY Protein kinase-like (PK-like) 45 342 IPR011009 -
Viun9g03759 385 ProSiteProfiles Protein kinase domain profile. 62 348 IPR000719 GO:0004672|GO:0005524|GO:0006468
Viun9g03759 385 ProSitePatterns Protein kinases ATP-binding region signature. 68 101 IPR017441 GO:0005524
Viun9g03759 385 CDD STKc_IRAK 68 344 - -
Viun9g03759 385 Pfam Protein tyrosine and serine/threonine kinase 66 342 IPR001245 GO:0004672|GO:0006468
Viun9g03759 385 FunFam Serine/threonine-protein kinase PBS1 148 360 - -
Viun9g03759 385 PANTHER OS01G0588500 PROTEIN-RELATED 47 346 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun9g03759 Viun-Chr9 42570755 42574201 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun9g03759 20 342 Glycoside Hydrolase AT3G07070 47.432 9.41e-98 295
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RLCK-VIIa-2 Viun9g03759 PK_Tyr_Ser-Thr 9.3e-46 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun9g03759 - - gmx:100812725 575.089