Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun9g03755 ATGATGAGAGATGGTGGTGTGACATCATCATCACCTGCTTCCATGATGGAAGCTCCACCACCCGATGGAACAACGACAACAATAACAACAATGGATTTTGATTACATGGGTGAGCTTTTCTTAGATGGGTGCTGGTTGGAAGCCTCTGTTGATGGATCTGACTTCTTGCCGCAAAGTCCTTCCTTTTCCAATCCCCTCTTTGACCCTTCATTCTCCTGGCCCGCCTTGGAGACCAACCACAATGAACCCCAGGGTGCTGCTTTTGGGACACAACAAGAAGGCCACAACAACGACAACATGGTTAATGTTGTTGTTGGTCAAGAGTTGCAGCCTGAAACTACTGCAATTGAAGGAGCATCTGAAGGGGTGAGAAGATGGAGGTTTGCACCCGCACCAAGTCCTGCACCTGGACCTTCCATAATGGAGAAGCTGATAAGGGCCCTCATGTGGATCAAAGACTACAACAGGAACAAAAACATGCTTACACAGATATGGGTGCCGGTTCATAGAGGTGGTAGACCGATTCTCGCAGCTAATGATATTCTGTTCTCACTCGATTCCAGGTCTGTGAACCTTGCAAAGTACCGTGAAATCTCAGTGAGGTACGAGTTTTCTGCGGAGGAGGGTGAGGTGAAGGAGTTGGTGGCAGCAGAGAAGGGTGGCTCCAAGGAATTGTTGCCAGGGTTACCAGGTAGAGTGTTCAGAGACAAGGTTCCTGAATGGACTCCTGATGTTAGATTCTTTAGGAGTGACGAGTATCCGCGAGTTGACCATGCTCAAGAGTATGATGTGCGTGGGTCACTCGCAGTACCAATCTTTGAGCAAGGGAGCAAGATGTGCTTGGGGGTTATTGAGGTTGTCATGACTACTCAGCAGATCAACTATGGTCCTGAACTTGACAGTGTTTGCAAAGCTCTTGAGGCCGTTGATCTTAGAAGCTCAAAACAATTAAGTATTCATAATGTGGAGGCATGCAACAGGTCCTACGAAGCTGTGCTACCTGAGATTCAACTGGTGTTGAGATCTGCATGTGAAATGCATAGATTACCTTTAGCTCAAACTTGGATCCCATGTGTTCAACAAGGCAAAGAGGGGTGTCGGCACTCAGAAGATAATTATCTGCTATGTATATCTCCGGTAGAACATGCTTGCTATGTTGGTGATCCCAAAATCAGGCCTTTTCACGAGTCTTGCACAGAACATCACTTGTTGAAGGGTGAAGGTGTTGCTGGGGGAGCTTTTATGACCAATCAACCATGTTTCTCAGACGACATAACATCCTTAAGCAAGAAAGACTATCCACTGTCTCATCATGCGAGGCTGTTTGGATTGCGTGCTGCTGTTGCCATACGCCTTCGAAGCATCTTCAATAGCACCGATGACTTTGTTTTGGAGTTCTTCTTGCCTGTAGATTGCAATGACAGTGAAGAGCAGAGGAAGATGCTGACATCATTGTCCATCATTATACAAAGGGTTTGTCGCAGCTTGCGGGTTATAAGTGATAAGGAATTGGAGGAAGCTAACTTGTCAATTGATGAAGTGATTTCCCTTGCAGATGGTGGATTTGATAGCACTGCAATTTGTGAGGAACTTCAACACAAAGGGACGGTTCTTTCATTAGATACTGAAGAAAAATTAAGTGAAACAACTGGTAGAAACTTCTCTGACCCGAGGCAGCAACAAGAAAGTCCTGTTTTAAAGGGAAACCTTGACTGTGTCAGGGAGTGTTCTACTTCTGTTGAGGGTAACTTATCAAGTGTGGGAATTAGTAAAATGGGAGAGAGAAGACGAGCCAAGGCAGAGAAAACTATCACTTTGCAAGTTCTTAGACAATATTTTGCTGGAAGTTTGAAAGATGCTGCAAAGAATATCGGTGTGTGTACAACAACCTTGAAAAGGATTTGCCGGCAACACGGGATAAAGCGTTGGCCCTCACGAAAGATCAAAAAGGTTGGTCACTCCTTACAGAAACTTCAACTTGTGATTGACTCGGTTCAAGGTGCCTCTGGGGCATTTCAAATCGATTCTTTCTATTCAAACTTCCCAGAACTAGCTTCTCCAAACTTATCAGGAACAACCATGTTCTCAACTCTGAATCAAACCGATAATCCAAACTCAATAAGCACGCACCCAGATCCTGGTTCATTGAGTCCAGAAGGCACATCAAAATCTCCCTCTTCCTCCTGCGGCCAGAGTTCCATTTCAAGCCATTCCTGCTCCAGCATGTCGGAGCTACAGCAGCAGAATCCCGCAACCAACATTGCCGGTAACAAAGATTCCACCATGGCTGGTGAAGATTCTGCAGATGTTGCGTTGAAGAGGATCAGAAGCGAAGCAGAGCTTAAAAGCCTGAATCAGGATAAAGCAAAGGTCTTGCCAAGATCACTGAGCCAGGAAACACTTGGTGAGCACCCCAAAAACCAGTATCAACGACCCTTGTTGAAAACAAGTAGCAAGGTGGATGGTCACAGAGTAAAAGTCACATACGGTGATGAAAAAACTCGGTTTCGGATGCCCAAGAACTGGGGCTATGAAGATCTTATGCAGGAAATTGGTAGGAGATTTAGTGTGAGTGACATGAGAAAATTTGATGTGAAATACTTGGATGATGACAGTGAGTGGGTACTACTCACTTGTGATGCTGACTTGGAGGAGTGCATTGATGTTTGTCGATCTTCTGAGAGTGCCACCATCAAATTAAGCCTACAAATTTCTAGTCATAGTATGAGAAGTTCTTTAGAGTTTAGATAA 2751 0.4504 MMRDGGVTSSSPASMMEAPPPDGTTTTITTMDFDYMGELFLDGCWLEASVDGSDFLPQSPSFSNPLFDPSFSWPALETNHNEPQGAAFGTQQEGHNNDNMVNVVVGQELQPETTAIEGASEGVRRWRFAPAPSPAPGPSIMEKLIRALMWIKDYNRNKNMLTQIWVPVHRGGRPILAANDILFSLDSRSVNLAKYREISVRYEFSAEEGEVKELVAAEKGGSKELLPGLPGRVFRDKVPEWTPDVRFFRSDEYPRVDHAQEYDVRGSLAVPIFEQGSKMCLGVIEVVMTTQQINYGPELDSVCKALEAVDLRSSKQLSIHNVEACNRSYEAVLPEIQLVLRSACEMHRLPLAQTWIPCVQQGKEGCRHSEDNYLLCISPVEHACYVGDPKIRPFHESCTEHHLLKGEGVAGGAFMTNQPCFSDDITSLSKKDYPLSHHARLFGLRAAVAIRLRSIFNSTDDFVLEFFLPVDCNDSEEQRKMLTSLSIIIQRVCRSLRVISDKELEEANLSIDEVISLADGGFDSTAICEELQHKGTVLSLDTEEKLSETTGRNFSDPRQQQESPVLKGNLDCVRECSTSVEGNLSSVGISKMGERRRAKAEKTITLQVLRQYFAGSLKDAAKNIGVCTTTLKRICRQHGIKRWPSRKIKKVGHSLQKLQLVIDSVQGASGAFQIDSFYSNFPELASPNLSGTTMFSTLNQTDNPNSISTHPDPGSLSPEGTSKSPSSSCGQSSISSHSCSSMSELQQQNPATNIAGNKDSTMAGEDSADVALKRIRSEAELKSLNQDKAKVLPRSLSQETLGEHPKNQYQRPLLKTSSKVDGHRVKVTYGDEKTRFRMPKNWGYEDLMQEIGRRFSVSDMRKFDVKYLDDDSEWVLLTCDADLEECIDVCRSSESATIKLSLQISSHSMRSSLEFR 916
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun9g03755 916 MobiDBLite consensus disorder prediction 1 22 - -
Viun9g03755 916 MobiDBLite consensus disorder prediction 692 747 - -
Viun9g03755 916 MobiDBLite consensus disorder prediction 7 22 - -
Viun9g03755 916 MobiDBLite consensus disorder prediction 800 815 - -
Viun9g03755 916 ProSiteProfiles RWP-RK domain profile. 590 671 IPR003035 -
Viun9g03755 916 Gene3D - 181 295 IPR029016 -
Viun9g03755 916 Pfam RWP-RK domain 603 651 IPR003035 -
Viun9g03755 916 SUPERFAMILY CAD & PB1 domains 823 907 - -
Viun9g03755 916 ProSiteProfiles PB1 domain profile. 822 905 IPR000270 GO:0005515
Viun9g03755 916 Gene3D - 821 903 - -
Viun9g03755 916 PANTHER PROTEIN NLP8 110 911 IPR045012 GO:0003700
Viun9g03755 916 MobiDBLite consensus disorder prediction 793 817 - -
Viun9g03755 916 SMART PB1_new 822 905 IPR000270 GO:0005515
Viun9g03755 916 CDD PB1_NLP 823 903 IPR034891 -
Viun9g03755 916 Pfam PB1 domain 823 903 IPR000270 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun9g03755 Viun-Chr9 42534649 42539424 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun9g03755 29 907 NLP Transcription Factor Family AT1G20640 47.699 0.0 736
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF RWP-RK Viun9g03755 PB1 3.3e-20 CL0072
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun9g03755 - - gmx:100785135 1458.74
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Viun9g03755 9 42534649 42539424 Viun9g03755 9 42534649 42539424 ECH