Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun9g03723 ATGTCATCTGTGTCGGAAACCCACGCCGGAGAAGACGGAAAACACTACCCTGCTCCGCTCGCTCCTCATGACGACGTCGTCAGGGACTCCTCTCTTTTCTGGGACACTCTCAGACGCTTTCACTTCCTCATGGGTACCAAGTTCATGATTCCTGTGATTGGAGGGAAGGAGCTAGATTTGCACGTTCTTTACGTGGAAGTTACCAGAAGAAGTGGCTACGAGAAGGTAGTTGCAGAGAAGAAGTGGAGGGAAGTTGGTAGCATTTTCAAGTTCTCAGCAACCACCACAAGTGCTTCTTTTGTGTTGAGGAAACATTACTTGAGTCTTCTTTATCATTACGAACAGGTTCACTTTTTCAAAGCTAGGGGTTCTGTTTATACTCCTTCAACAGATGCATTTTCCGGGAACAGTCCTTCTTGGAGACCTGAATTAGCTATTGTGGAATATTCTCCTAAGCCCTCCAATAGTAGTTCCGAATCCCGTGCTGAAGAAACTTCATGTCTCTCAGGAAATGGAACAATAGAGGGAAAATTTGAGTGTGGTTATTTGGTGTCTGTGAAACTGGGTTCAGAGGTTCTGAGAGGGGTGCTTTACCATCCAGAAAAAATGGTTGCTCCTCCTTCGATTCCGCAGCACGAAAATGCGATTGTGCCATTCAAAAGCAAAGGTAACCGTTCTGGTCGTAGGAGAAGAAACAAGAGAAGGTGGGACCCTAACTATCCAAAGCCGAATAGGAGTGGCTATAACTTCTTCTTTGCTGAAAAGCATTACTCTCTCAAAGCTCTCTACCCGAACAGAGAAAGGGAGTTTACCAAGATGATTGGGCAGTCATGGAACAGTCTTAGCCCCGAAGAACGAATGGTTTATCAGAACATCGGGTTAAGAGACAAAGAAAGGTACAAGAGAGAACTGACGGAGTACAAAGAGAAGATGAAGCTTAGGCAGACCTCAGAAGTTGGACTTCCATAG 969 0.4541 MSSVSETHAGEDGKHYPAPLAPHDDVVRDSSLFWDTLRRFHFLMGTKFMIPVIGGKELDLHVLYVEVTRRSGYEKVVAEKKWREVGSIFKFSATTTSASFVLRKHYLSLLYHYEQVHFFKARGSVYTPSTDAFSGNSPSWRPELAIVEYSPKPSNSSSESRAEETSCLSGNGTIEGKFECGYLVSVKLGSEVLRGVLYHPEKMVAPPSIPQHENAIVPFKSKGNRSGRRRRNKRRWDPNYPKPNRSGYNFFFAEKHYSLKALYPNREREFTKMIGQSWNSLSPEERMVYQNIGLRDKERYKRELTEYKEKMKLRQTSEVGLP 322
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun9g03723 322 CDD HMG-box_AtHMGB9-like 241 307 - -
Viun9g03723 322 SMART hmgende2 240 309 IPR009071 -
Viun9g03723 322 Pfam HMG (high mobility group) box 241 308 IPR009071 -
Viun9g03723 322 MobiDBLite consensus disorder prediction 213 241 - -
Viun9g03723 322 SMART ARID_2 24 114 - -
Viun9g03723 322 SUPERFAMILY HMG-box 238 311 IPR036910 -
Viun9g03723 322 ProSiteProfiles HMG boxes A and B DNA-binding domains profile. 241 308 IPR009071 -
Viun9g03723 322 SUPERFAMILY ARID-like 25 126 IPR036431 GO:0003677
Viun9g03723 322 Gene3D High mobility group box domain 225 320 IPR036910 -
Viun9g03723 322 PANTHER HIGH MOBILITY GROUP B PROTEIN 9 4 315 - -
Viun9g03723 322 CDD ARID_HMGB9-like 29 114 IPR045303 GO:0003677
Viun9g03723 322 Gene3D - 22 125 IPR036431 GO:0003677
Viun9g03723 322 SMART bright_3 28 119 IPR001606 GO:0003677
Viun9g03723 322 Pfam ARID/BRIGHT DNA binding domain 31 114 IPR001606 GO:0003677
Viun9g03723 322 FunFam High mobility group B protein 15 21 134 - -
Viun9g03723 322 ProSiteProfiles ARID domain profile. 27 118 IPR001606 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun9g03723 Viun-Chr9 42343217 42345643 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun9g03723 14 315 ARID Transcription Factor Family AT1G76110 65.049 3.94e-135 385
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR ARID Viun9g03723 ARID 1.6e-17 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun9g03723 - - gmx:100784746 573.548
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Viun9g03723 9 42343217 42345643 Viun9g03723 9 42343217 42345643 ECH