LGRPv2

Gene search

Sequence information

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Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Viun9g03720	ATGACCCAAAGAGAGGAAGTTGTGCTTGATTTCGAAGATAACAATGGCGGAAGCAACAACAAAGATGAAAATTTACCATCGAAAGGTGCTGTCAACGGTTCAAGTGACAAGCTTCATCAAGACTCGCGGGAAAAACGCAGAGGCAGTGAATCAACAAGAAAGAGAAAGCAGGAACAGCAAAAAAACGAAGAAAACCACCTTCAAACTTCACATTCAGAAGAAAATGTTGTGAGGTCCTCTTCGAACAATTCAACTCCACGATACTCGTGGAAATCATCGATGAGCAGAACAAAGTCTCGGCTGATAGACCCTCCTGAGGAATCATGCGCAAATTCAGAGTCAAGTGAACAAAAAGTGGCAGAAAACGATGACAGTGTTGAGGACATGCCAGAAATTTACAAGAAAACGAGGTTCAGTGCGTTCTCACTGCTTCAGTGGCTATGTCTCGCCTTAATAATCGTAGCGTTGCTTTCAAACATTTGGGTATCGTGTTTGCAAAAACTGAAACTCTGTGGGATTCCTCTGTGGGAATGGGAGACAATGATTTTGGTTATACTTTGTGGACGTTTGGTCTCAGGTTGGGTGATTAAACTAATCGTGTTCTTCGTGGAACGCAATTTTATACTGCGAAAAAGAGTGCTGTATTTTGTGTACGGTTTGAAACACTCGGTGAAAAACTGTGTCTGGTTGGGTCTGGTTCTGCTGGTGTGGCATTTTATTTTGGTCAACGCGGTAAAGAAAAAGGTCAACGACAGGATTTTGTCGTGTGTGACAAAGGTTGTAGTGTGTCTGTTCATCGGCACTCTTTTGTGGCTCATTAAAACGATCCTCGTGAAGGTCTTCGCCTTGCACTTCCACGTGAAGACGTTCTTCGAACGGATTCGGGAGGCTCTGTTCAGCCAATACGTGATCGAAACGCTGTCGTGTGATCGGTTGAGGGAAGAGGAGGAAGGTGAAGATAGATCCGTTGGGAGGGTGTTGTGTGATAAGAAGAAGAAGAAGCAAGATGAGGAAATGTCGATTGAGCAGTTGCATAGGTTGAATAAGAGAAATATATCAGCGTGGAACATGAAGAGAATGATCAACATCGTCATGCATGGGTCGTTTACTACATTGGACGAACGTATCTTTTGTTCAGATGTTGAGGATGAGCCTTTGCTGCAACTTCGAAGCGAAAATCAAGCAAAGATCGCAGCTCAGAAAATTTTTCATAACGTTGCGCAGCCAGGATCCCAATGCATTTTCTTGCAAGATGTGATGCAGTTCATGCGAAGAGACGAGGCTTTGAAGTCTATGGATCTGTTGGGAGCAGCTTGTACAGACCATGGGATTAGCATGTCTTGTCTTAGAGAGTGGATGGTGAATGCTTTCAGGGAGAGAAGGGCACTGGCACTATCACTGAAAGACACAAAAACTGCAGTGGATGAGCTCCATAACATGTTGAACATGATTGTTGGCATTGTCATTTTGATTGTCTGGCTTGCCATACTAGGAACTCCAATCTTACACTTCCTCGTCTTCATGGGATCCCAGCTTCTGTTGGCAGTGTTTGTGTTTGGGAATTCTTGCAGAACTGTTTTTGAAGCAATCATCTTCTTATTTGTGATGCACCCATTTGATGTTGGTGATCGATGTGAAGTAGATGGAGTCCAGATGGTAGTGGAAGAGATGAATATACTCACAACAGTGTTTCTGAAGTGCGATAACCAGAAGGTTACATACCCAAACAGTGTTCTCGCTACCAAAGCAATTAGTAATTATCAACGTAGTCCAGACATGGGAGATGCAGTGGATTTCTGCATTCATGTCTCCACTCCATTAGATAAAGTTGCAACTATGAAAAGAAGAATTATAGAGTATATTGAAAGGAAGAATGAACAGTGGCATGTGGCACCAATGGTGATAATGAAGGATGTGGAAGATTTGAACAAAGTGAACATGTCAGTGTGGCTTACACACAAAATGAATTATCAAGACATGAAAGAAAGATGGAACAGAAGAGCGGAATTGATTGAAGAGATGATGAAAGTGTTGAAGGAACTTGATATTGAATACAGGCTTCTTCCTATTGATGTGAATGTTAGAAATCAACCTCCTCTGCTTTCGAACAAGCTTCCGTCCAATTGGAAAACTTGTGCCACCTCTCTCTCTTAG	2154	0.4257	MTQREEVVLDFEDNNGGSNNKDENLPSKGAVNGSSDKLHQDSREKRRGSESTRKRKQEQQKNEENHLQTSHSEENVVRSSSNNSTPRYSWKSSMSRTKSRLIDPPEESCANSESSEQKVAENDDSVEDMPEIYKKTRFSAFSLLQWLCLALIIVALLSNIWVSCLQKLKLCGIPLWEWETMILVILCGRLVSGWVIKLIVFFVERNFILRKRVLYFVYGLKHSVKNCVWLGLVLLVWHFILVNAVKKKVNDRILSCVTKVVVCLFIGTLLWLIKTILVKVFALHFHVKTFFERIREALFSQYVIETLSCDRLREEEEGEDRSVGRVLCDKKKKKQDEEMSIEQLHRLNKRNISAWNMKRMINIVMHGSFTTLDERIFCSDVEDEPLLQLRSENQAKIAAQKIFHNVAQPGSQCIFLQDVMQFMRRDEALKSMDLLGAACTDHGISMSCLREWMVNAFRERRALALSLKDTKTAVDELHNMLNMIVGIVILIVWLAILGTPILHFLVFMGSQLLLAVFVFGNSCRTVFEAIIFLFVMHPFDVGDRCEVDGVQMVVEEMNILTTVFLKCDNQKVTYPNSVLATKAISNYQRSPDMGDAVDFCIHVSTPLDKVATMKRRIIEYIERKNEQWHVAPMVIMKDVEDLNKVNMSVWLTHKMNYQDMKERWNRRAELIEEMMKVLKELDIEYRLLPIDVNVRNQPPLLSNKLPSNWKTCATSLS	717

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Annotation information

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Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Viun9g03720	717	FunFam	Predicted mechanosensitive ion channel	538	587	-	-
	Viun9g03720	717	MobiDBLite	consensus disorder prediction	72	99	-	-
	Viun9g03720	717	Pfam	Mechanosensitive ion channel	479	684	IPR006685	GO:0016020\|GO:0055085
	Viun9g03720	717	MobiDBLite	consensus disorder prediction	1	125	-	-
	Viun9g03720	717	Coils	Coil	661	681	-	-
	Viun9g03720	717	MobiDBLite	consensus disorder prediction	37	71	-	-
	Viun9g03720	717	PIRSF	Memb_At2g17000	3	716	IPR016688	-
	Viun9g03720	717	SUPERFAMILY	Sm-like ribonucleoproteins	528	587	IPR010920	-
	Viun9g03720	717	Gene3D	-	538	587	IPR023408	-
	Viun9g03720	717	PANTHER	MECHANOSENSITIVE ION CHANNEL PROTEIN 5	21	709	IPR016688	-

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Duplication type information

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Select	Gene	Chromosome	Start	End	Duplicated_type
	Viun9g03720	Viun-Chr9	42329597	42332796	Tandem

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Functional genes information

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Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Viun9g03720	49	715	Mechanosensitive Ion Channel Family	AT1G78610	47.885	0.0	655

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Pathway information

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Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Viun9g03720	K22048		-	cave:132190409	842.802

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