Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun9g03720 ATGACCCAAAGAGAGGAAGTTGTGCTTGATTTCGAAGATAACAATGGCGGAAGCAACAACAAAGATGAAAATTTACCATCGAAAGGTGCTGTCAACGGTTCAAGTGACAAGCTTCATCAAGACTCGCGGGAAAAACGCAGAGGCAGTGAATCAACAAGAAAGAGAAAGCAGGAACAGCAAAAAAACGAAGAAAACCACCTTCAAACTTCACATTCAGAAGAAAATGTTGTGAGGTCCTCTTCGAACAATTCAACTCCACGATACTCGTGGAAATCATCGATGAGCAGAACAAAGTCTCGGCTGATAGACCCTCCTGAGGAATCATGCGCAAATTCAGAGTCAAGTGAACAAAAAGTGGCAGAAAACGATGACAGTGTTGAGGACATGCCAGAAATTTACAAGAAAACGAGGTTCAGTGCGTTCTCACTGCTTCAGTGGCTATGTCTCGCCTTAATAATCGTAGCGTTGCTTTCAAACATTTGGGTATCGTGTTTGCAAAAACTGAAACTCTGTGGGATTCCTCTGTGGGAATGGGAGACAATGATTTTGGTTATACTTTGTGGACGTTTGGTCTCAGGTTGGGTGATTAAACTAATCGTGTTCTTCGTGGAACGCAATTTTATACTGCGAAAAAGAGTGCTGTATTTTGTGTACGGTTTGAAACACTCGGTGAAAAACTGTGTCTGGTTGGGTCTGGTTCTGCTGGTGTGGCATTTTATTTTGGTCAACGCGGTAAAGAAAAAGGTCAACGACAGGATTTTGTCGTGTGTGACAAAGGTTGTAGTGTGTCTGTTCATCGGCACTCTTTTGTGGCTCATTAAAACGATCCTCGTGAAGGTCTTCGCCTTGCACTTCCACGTGAAGACGTTCTTCGAACGGATTCGGGAGGCTCTGTTCAGCCAATACGTGATCGAAACGCTGTCGTGTGATCGGTTGAGGGAAGAGGAGGAAGGTGAAGATAGATCCGTTGGGAGGGTGTTGTGTGATAAGAAGAAGAAGAAGCAAGATGAGGAAATGTCGATTGAGCAGTTGCATAGGTTGAATAAGAGAAATATATCAGCGTGGAACATGAAGAGAATGATCAACATCGTCATGCATGGGTCGTTTACTACATTGGACGAACGTATCTTTTGTTCAGATGTTGAGGATGAGCCTTTGCTGCAACTTCGAAGCGAAAATCAAGCAAAGATCGCAGCTCAGAAAATTTTTCATAACGTTGCGCAGCCAGGATCCCAATGCATTTTCTTGCAAGATGTGATGCAGTTCATGCGAAGAGACGAGGCTTTGAAGTCTATGGATCTGTTGGGAGCAGCTTGTACAGACCATGGGATTAGCATGTCTTGTCTTAGAGAGTGGATGGTGAATGCTTTCAGGGAGAGAAGGGCACTGGCACTATCACTGAAAGACACAAAAACTGCAGTGGATGAGCTCCATAACATGTTGAACATGATTGTTGGCATTGTCATTTTGATTGTCTGGCTTGCCATACTAGGAACTCCAATCTTACACTTCCTCGTCTTCATGGGATCCCAGCTTCTGTTGGCAGTGTTTGTGTTTGGGAATTCTTGCAGAACTGTTTTTGAAGCAATCATCTTCTTATTTGTGATGCACCCATTTGATGTTGGTGATCGATGTGAAGTAGATGGAGTCCAGATGGTAGTGGAAGAGATGAATATACTCACAACAGTGTTTCTGAAGTGCGATAACCAGAAGGTTACATACCCAAACAGTGTTCTCGCTACCAAAGCAATTAGTAATTATCAACGTAGTCCAGACATGGGAGATGCAGTGGATTTCTGCATTCATGTCTCCACTCCATTAGATAAAGTTGCAACTATGAAAAGAAGAATTATAGAGTATATTGAAAGGAAGAATGAACAGTGGCATGTGGCACCAATGGTGATAATGAAGGATGTGGAAGATTTGAACAAAGTGAACATGTCAGTGTGGCTTACACACAAAATGAATTATCAAGACATGAAAGAAAGATGGAACAGAAGAGCGGAATTGATTGAAGAGATGATGAAAGTGTTGAAGGAACTTGATATTGAATACAGGCTTCTTCCTATTGATGTGAATGTTAGAAATCAACCTCCTCTGCTTTCGAACAAGCTTCCGTCCAATTGGAAAACTTGTGCCACCTCTCTCTCTTAG 2154 0.4257 MTQREEVVLDFEDNNGGSNNKDENLPSKGAVNGSSDKLHQDSREKRRGSESTRKRKQEQQKNEENHLQTSHSEENVVRSSSNNSTPRYSWKSSMSRTKSRLIDPPEESCANSESSEQKVAENDDSVEDMPEIYKKTRFSAFSLLQWLCLALIIVALLSNIWVSCLQKLKLCGIPLWEWETMILVILCGRLVSGWVIKLIVFFVERNFILRKRVLYFVYGLKHSVKNCVWLGLVLLVWHFILVNAVKKKVNDRILSCVTKVVVCLFIGTLLWLIKTILVKVFALHFHVKTFFERIREALFSQYVIETLSCDRLREEEEGEDRSVGRVLCDKKKKKQDEEMSIEQLHRLNKRNISAWNMKRMINIVMHGSFTTLDERIFCSDVEDEPLLQLRSENQAKIAAQKIFHNVAQPGSQCIFLQDVMQFMRRDEALKSMDLLGAACTDHGISMSCLREWMVNAFRERRALALSLKDTKTAVDELHNMLNMIVGIVILIVWLAILGTPILHFLVFMGSQLLLAVFVFGNSCRTVFEAIIFLFVMHPFDVGDRCEVDGVQMVVEEMNILTTVFLKCDNQKVTYPNSVLATKAISNYQRSPDMGDAVDFCIHVSTPLDKVATMKRRIIEYIERKNEQWHVAPMVIMKDVEDLNKVNMSVWLTHKMNYQDMKERWNRRAELIEEMMKVLKELDIEYRLLPIDVNVRNQPPLLSNKLPSNWKTCATSLS 717
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun9g03720 717 FunFam Predicted mechanosensitive ion channel 538 587 - -
Viun9g03720 717 MobiDBLite consensus disorder prediction 72 99 - -
Viun9g03720 717 Pfam Mechanosensitive ion channel 479 684 IPR006685 GO:0016020|GO:0055085
Viun9g03720 717 MobiDBLite consensus disorder prediction 1 125 - -
Viun9g03720 717 Coils Coil 661 681 - -
Viun9g03720 717 MobiDBLite consensus disorder prediction 37 71 - -
Viun9g03720 717 PIRSF Memb_At2g17000 3 716 IPR016688 -
Viun9g03720 717 SUPERFAMILY Sm-like ribonucleoproteins 528 587 IPR010920 -
Viun9g03720 717 Gene3D - 538 587 IPR023408 -
Viun9g03720 717 PANTHER MECHANOSENSITIVE ION CHANNEL PROTEIN 5 21 709 IPR016688 -
Viun9g03720 717 MobiDBLite consensus disorder prediction 13 36 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun9g03720 Viun-Chr9 42329597 42332796 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun9g03720 49 715 Mechanosensitive Ion Channel Family AT1G78610 47.885 0.0 655
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun9g03720 K22048 - cave:132190409 842.802