LGRPv2

Gene search

Sequence information

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Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Viun9g03716	ATGTCTCAAAAATACAGCACCGTGGTCTACCTCCATGGGACCCTCGATCTGGTAATCGTCGAGGCTCGCTGCCTTCCCAACATGGATTTGCTCTCTGAGCGTGTCCGAAGGTTCTTCTCCGCCCTCAACACTTGCAGCACCTCCATCTCAGCAAAACGGAAGCTCCACCGTGCGCGCCACCACCACCACAAGATCATCACCAGCGATCCTTACGTCACCGTGTGCCTTGCTGGAGCCACCGTCGCGCGCACCCGCGTCATCTCGAATTCGCAGAGCCCTGCCTGGGACGAGCACTTCAAGATTCCACTCGCGCACCCGGCCGCACAGGTCGACTTCTTCGTGAAGGACAACGACATGTTCGGCGCCGACCTCATCGGAATCGTCACCATCTCCGCCGAGAGGATCCTCGCAGGTGGACCAATCAGCGACTGGTTTCCGATCATCGGCTCGTTCGGAAAGCCGCCTAAGCCTGACTGTGCGCTGTGCCTAGCGATGAAATTCACGAAGTGCGAGGACATTCGCTTGTTCCGGTCTCTCAAAGAACCGGATCCGGATCGGTTCGTGGTTCGGGACTCGTATTTCCCGGTCCGGCATGGAGGGGCGGTGACGCTGTATCAGGACGCGCACGTGCCAGAGGCGATGTTGCCGGAGGTTGAGTTAGAGGAGGGTGTGGTGTTTGAGCATGGGAGGTGCTGGGAAGATATATGCCACGCTATTTTGGAAGCGCACCATTTGGTTTACATTGTGGGTTGGTCCATCTACCACAAGGTTAGGCTCGTGAGAGAGCCTACCAAACCCTTACCAAGCGGTGGTAGTTTGAATTTGGGGGAGTTGCTGAAGTACAAGTCCCAAGAAGGTTTGCGAGTTTTACTTTTGGTTTGGGATGATAAGACTTCGCACAGCAAGTTTTTCATTAACACGGCTGGAGTAATGCAAACACATGATGAAGAAACTCGAAAGTTTTTCAAGCATTCTTCAGTTAGATGTTTACTGTCACCCAGATATGCCAGCAGTAAGCTTAGCATTTTCAGGCAGCAGGTCGTTGGAACGCTCTTTACACATCATCAGAAATGTGTGATTGTGGATACTCAAGCACATGGCAATAATAGGAAGATAACTGCATTTATAGGTGGTCTAGATCTTTGTGATGGCCGCTATGATACACCTGAGCACAGACTTTTTCGCGATATTGACACTGTTTATCAGGACGATTATCATAACCCCACTTTTTGCACGGGAACCAAAGGTCCAAGGCAACCATGGCATGATTTACATTGCAAAATTGAAGGCCCTGCTGCATATGATATACTCGCTAATTTTGAGCAGCGTTGGAAAAAGGCCACGAGATGGTCTGAGTTGGGTCGAAAGCTCAAAAGAGTGTCTCACTGGCACGATGATTCTTTGATCAAGTTAGAACGCATCTCTTGGATCCTTAGTCCTTCAGAATTAATTCAAACTGATGATCCTGAACTCTGGGTTTCGAAGGAAGGCGATCCTAAAAATTGGCATGTTCAGGTTTTTCGATCCATAGATTCTGGCTCTTTGAAAGGATTTCCTAAGGATGTATTTGAAGCTGAGACCCAGAACCTTGTGTGTGCAAAAAATCTGGTTATAGACAAGAGTATTCAAACAGCGTATATACATGCCATCAGATCTGCTCAACATTTTATTTATATCGAGAATCAATATTTTGTTGGATCATCCTTTGCTTGGCCAGTTTACAAAGATGCAGGTGCTGATAACCTAATTCCGATGGAGTTGGCACTGAAGATAGTTAGTAAGATACGATCCAAGGAGAGATTTACAGTTTATATAGTCATCCCAATGTGGCCCGAAGGTAACCCTTCCTCTGCTTCTGTGCAAGAGATACTCTTTTGGCAGGCACAAACTATGCAAATGATGTATAGTGTCATAGCTCGGGAATTAAAAGTTATGGAACTTGACCATCATCCACAAGATTATCTCAACTTCTATTGTCTTGGAAACCGAGAGCCGTTGAAAAATGACTTTTTAAGTCCAAGTAGTTCGTCTCCAGATAATGGCGAAACGATTTCAGCCTCACAAAAGTTCCGAAGGTTCATGATTTATGTACATGCCAAGGGAATGATTGTGGATGACGAATATGTAATTCTTGGGTCTGCCAATATCAATCAACGATCTATGGCTGGATCAAGAGACACTGAGATAGCAATGGGTGCGTATCAACCCCATCATACATGGGGTAAGAAAAAGGGACATCCGCATGGTCAGGTATATGGGTATAGGATGTCTTTATGGGCAGAACACATAGGGTGCATACAAGGTTGCTTCAAGGATCCTGAAAGTCTGGAATGCGTGAAAAGTGTGAACAGTATTGCTGAAGATAACTGGAGGAGGTACACATCTGACGATAATAATCCATTGCAAGGGCACCTGTTGAAATATCCTGTGAATATAAATGCCAATGGGAAGGTAAAGTCCATACCTGGATTTGAGTGTTTCCCAGATGTTGGAGGCAAGGTGCTTGGCTCCAGATCCAACCTTCCTGATGCATTAACCACATAG	2544	0.4674	MSQKYSTVVYLHGTLDLVIVEARCLPNMDLLSERVRRFFSALNTCSTSISAKRKLHRARHHHHKIITSDPYVTVCLAGATVARTRVISNSQSPAWDEHFKIPLAHPAAQVDFFVKDNDMFGADLIGIVTISAERILAGGPISDWFPIIGSFGKPPKPDCALCLAMKFTKCEDIRLFRSLKEPDPDRFVVRDSYFPVRHGGAVTLYQDAHVPEAMLPEVELEEGVVFEHGRCWEDICHAILEAHHLVYIVGWSIYHKVRLVREPTKPLPSGGSLNLGELLKYKSQEGLRVLLLVWDDKTSHSKFFINTAGVMQTHDEETRKFFKHSSVRCLLSPRYASSKLSIFRQQVVGTLFTHHQKCVIVDTQAHGNNRKITAFIGGLDLCDGRYDTPEHRLFRDIDTVYQDDYHNPTFCTGTKGPRQPWHDLHCKIEGPAAYDILANFEQRWKKATRWSELGRKLKRVSHWHDDSLIKLERISWILSPSELIQTDDPELWVSKEGDPKNWHVQVFRSIDSGSLKGFPKDVFEAETQNLVCAKNLVIDKSIQTAYIHAIRSAQHFIYIENQYFVGSSFAWPVYKDAGADNLIPMELALKIVSKIRSKERFTVYIVIPMWPEGNPSSASVQEILFWQAQTMQMMYSVIARELKVMELDHHPQDYLNFYCLGNREPLKNDFLSPSSSSPDNGETISASQKFRRFMIYVHAKGMIVDDEYVILGSANINQRSMAGSRDTEIAMGAYQPHHTWGKKKGHPHGQVYGYRMSLWAEHIGCIQGCFKDPESLECVKSVNSIAEDNWRRYTSDDNNPLQGHLLKYPVNINANGKVKSIPGFECFPDVGGKVLGSRSNLPDALTT	847

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Annotation information

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Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Viun9g03716	847	PANTHER	PHOSPHOLIPASE D	6	837	IPR015679	-
	Viun9g03716	847	SMART	C2_3c	14	144	IPR000008	-
	Viun9g03716	847	CDD	C2_plant_PLD	8	168	-	-
	Viun9g03716	847	SMART	pld_4	693	720	IPR001736	GO:0003824
	Viun9g03716	847	SMART	pld_4	350	385	IPR001736	GO:0003824
	Viun9g03716	847	Pfam	PLD-like domain	547	729	IPR025202	-
	Viun9g03716	847	ProSiteProfiles	Phospholipase D phosphodiesterase active site profile.	350	385	IPR001736	GO:0003824
	Viun9g03716	847	Pfam	C2 domain	13	147	IPR000008	-
	Viun9g03716	847	SUPERFAMILY	Phospholipase D/nuclease	539	778	-	-
	Viun9g03716	847	SUPERFAMILY	C2 domain (Calcium/lipid-binding domain, CaLB)	10	167	IPR035892	-

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Duplication type information

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Select	Gene	Chromosome	Start	End	Duplicated_type
	Viun9g03716	Viun-Chr9	42309886	42316262	Dispersed/Wgd

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Functional genes information

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Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Viun9g03716	1	676	Phospholipase D Gene Family (Wang group)	AT4G35790	65.224	0.0	937

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Pathway information

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Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Viun9g03716	K01115		-	gmx:100795859	1545.79

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Event-related genes

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Select	Gene_1	Chr_1	Start_1	End_1	Gene_2	Chr_2	Start_2	End_2	Event_name
	Viun9g03716	9	42309886	42316262	Viun9g03716	9	42309886	42316262	ECH

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