Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun9g03707 ATGATTGATTCGGTTCTTCTCGCTCTTTTCTTGCCATGCCTCGGCATGACTGCGGTTTTTATCGTCTACATGTGCCTTCTTTGGTACGCCACCACCCGCCACCATCCCTCCGGTAATGGGCTACCGGTGAAGCAGGTCGCTAACAAGGGTCTTTCTCCTCTGGAGTTGGAGAAACTCCCCAAAATCACCGGCAAAGAACTAGTTTTGGGTACCGAATGCGCCGTTTGCCTGGACGAGATCGAGGGCGAGCAACCGGCTAGACTGGTCCCCGGTTGCAACCATGGCTTCCATGTCCAATGTGCTGATACTTGGCTCTCCAACCACCCTCTCTGTCCTGTTTGTAGGACTAAACTCGATCCCCAGATTTTTACTTCCCATAATCCCTGTTGA 390 0.5231 MIDSVLLALFLPCLGMTAVFIVYMCLLWYATTRHHPSGNGLPVKQVANKGLSPLELEKLPKITGKELVLGTECAVCLDEIEGEQPARLVPGCNHGFHVQCADTWLSNHPLCPVCRTKLDPQIFTSHNPC 129
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun9g03707 129 ProSiteProfiles Zinc finger RING-type profile. 73 115 IPR001841 -
Viun9g03707 129 SUPERFAMILY RING/U-box 60 121 - -
Viun9g03707 129 PANTHER E3 UBIQUITIN-PROTEIN LIGASE ATL42 16 125 - -
Viun9g03707 129 SMART ring_2 73 114 IPR001841 -
Viun9g03707 129 Pfam Ring finger domain 72 115 IPR001841 -
Viun9g03707 129 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 41 121 IPR013083 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun9g03707 Viun-Chr9 42239799 42240617 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun9g03707 1 129 C3H Transcription Factor Family AT5G42200 56.618 6.58e-47 147
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun9g03707 K19037 - gmx:100776003 238.039
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Viun9g03707 9 42239799 42240617 Viun9g03707 9 42239799 42240617 ECH
Viun8g00067 8 309619 310518 Viun9g03707 9 42239799 42240617 PCT