Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun9g03705 ATGACTCAAGATCTAGAGATGAAGGATCGCTCAACGCCTTCCAACTCCGTTTCTTCACCTGCTCCGTCTACTCTGCAGCATTTGAGGGAGATAGCTTCGCTTATCGAGACCGGTTCGTACTCGAAGGAAGTCCGTAGAATTGCTCGTGCGGTTCGCCTTACAATTGCGTTGAGGCGTAAATTAACATCGTCGATTATCTCGTCTTTTCTTGATCATGTCCTCACTCCTGGTTCTGAAGCTCATGCCAAATTGTCTGCGTATCTTCCGAAGGAGGATGATCACGAGATGGAAGTGGATGCCGCAACATCTGCAATTCAAACCCCAGCTAAACACTTGTTGCCCGAGCTAGAAATCTATTGTTACCTGCTTGTACTACTTTTTCTGATTGATAAAAAAAAATACAATGAGGCCAAAGCTTGTTCCTCAGCTAGCATTGTTTGGCTGAAGAACACTAACAGGAGAACTGTTGATGTTATTGCATCCAGACTGTATTTTTACTATTCATATAGCTATGAGCTTACGGGAGATCTTGCTGAAATCCGTGGCAACCTCCTTGCATTGCACCGAATTGCCACCCTGCGCCATGACGAGTTGGGCCAGGAAACACTTCTTAATTTGTTACTCCGTAACTACCTTCACTACAATCTATATGATCAGGCAGAAAAGTTGAGGTCTAAGGCTCCTCGATTTGAAGCGCACTCAAACCAACAGTTCTGTCGTTACCTCTTCTACCTTGGGAAAATTCGGACTATTCAATTGGAGTATACAGATGCAAAAGAGTCTCTCCTGCAGGCTGCCCGGAAAGCTCCAGTTGCTGCACGGGGGTTTCGAATTCAATGTAACAAGTGGGCTGTGATAGTTAGGTTACTGTTGGGAGAAATACCAGAGCGCACTGTTTTTATGCAGAAAGGAATGGAAAAAGCTTTAAGGCCTTACTTTGAGCTTACAAATGCTGTACGGATTGGAGACTTGGAACTGTTTAGGAATATTGCAGACAAGTTTGCCACTACTTTTAATGCAGATAGAACCCATAATTTGATTGTTCGATTGCGGCATAATGTTATCAGGACTGGTCTACGTAACATCAGCATCTCCTATTCCCGCATCTCCCTAGCTGATGTTGCTAAAAAACTGAGGTTGAACTCTCCGAATCCTATTGCTGATGCTGAGAGCATTGTATCAAAGGCTATTCGTGATGGTGCAATTGATGCTACATTGGATCATGCCAACGGGTGGATGGTGTCCAAGGAAACCGGAGATATTTACTCCACAAATGAGCCTCAGTTGGCCTTTAATTCTCGAATTGCATTCTGTCTTAACATGCACAATGAGGCAGTACGAGCACTTCGTTTTCCACCAAACACACACAAAGAGAAGGAGAGTGCTGAAAAGAGAAGAGAGAGACAACAACAGGAGCAGGAGCTGGCCAAGCATATTGCAGAGGAAGATGACGACGATTTCTGA 1464 0.444 MTQDLEMKDRSTPSNSVSSPAPSTLQHLREIASLIETGSYSKEVRRIARAVRLTIALRRKLTSSIISSFLDHVLTPGSEAHAKLSAYLPKEDDHEMEVDAATSAIQTPAKHLLPELEIYCYLLVLLFLIDKKKYNEAKACSSASIVWLKNTNRRTVDVIASRLYFYYSYSYELTGDLAEIRGNLLALHRIATLRHDELGQETLLNLLLRNYLHYNLYDQAEKLRSKAPRFEAHSNQQFCRYLFYLGKIRTIQLEYTDAKESLLQAARKAPVAARGFRIQCNKWAVIVRLLLGEIPERTVFMQKGMEKALRPYFELTNAVRIGDLELFRNIADKFATTFNADRTHNLIVRLRHNVIRTGLRNISISYSRISLADVAKKLRLNSPNPIADAESIVSKAIRDGAIDATLDHANGWMVSKETGDIYSTNEPQLAFNSRIAFCLNMHNEAVRALRFPPNTHKEKESAEKRRERQQQEQELAKHIAEEDDDDF 487
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun9g03705 487 PANTHER 26S PROTEASOME NON-ATPASE REGULATORY SUBUNIT 3/COP9 SIGNALOSOME COMPLEX SUBUNIT 3 11 478 - -
Viun9g03705 487 SMART PCI/PINT associated module 174 345 - -
Viun9g03705 487 FunFam 26S proteasome non-ATPase regulatory subunit 3 120 443 - -
Viun9g03705 487 Coils Coil 454 481 - -
Viun9g03705 487 SMART motif in proteasome subunits, Int-6, Nip-1 and TRIP-15 345 438 IPR000717 -
Viun9g03705 487 Pfam Proteasome regulatory subunit C-terminal 420 486 IPR013586 GO:0000502|GO:0030234|GO:0042176
Viun9g03705 487 ProSiteProfiles PCI domain profile. 239 420 IPR000717 -
Viun9g03705 487 Gene3D - 28 440 - -
Viun9g03705 487 Pfam PCI domain 311 416 IPR000717 -
Viun9g03705 487 MobiDBLite consensus disorder prediction 452 480 - -
Viun9g03705 487 SUPERFAMILY "Winged helix" DNA-binding domain 346 421 IPR036390 -
Viun9g03705 487 MobiDBLite consensus disorder prediction 1 23 - -
Viun9g03705 487 MobiDBLite consensus disorder prediction 452 487 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun9g03705 Viun-Chr9 42223350 42226585 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun9g03705 K03033 - gmx:100814379 904.049
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Viun9g03705 9 42223350 42226585 Viun9g03705 9 42223350 42226585 ECH
Viun8g00069 8 323685 328408 Viun9g03705 9 42223350 42226585 PCT