Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun9g03685 ATGACTCTTGAAGATTTCTTTACCTTGACCGAGATGAAAGATGGGCTCACAGCACCTTCTCGGGTGCAGGAGCTGGTCTCTGTGATGCAGAAAGAAAAAAGTTGCGATGTTAAAAATTCTGCTGATGCGACTAGGCAGTGGGCTGCTGTTGCAAGCACCATTGCCGCTACAGAGAATAAAGATTGCCTTGATCTTTTTATTCAATTGGATGGACTTTGCTTCATCAACGGATGGTTAAAGGATGCCCAAAAATTTGAGGTTGATGCAAAAGACAGTTTTGTTGAAGAATCAATTACTGCAATGTTACGTGCAGTTGAAAAGCTTCATCTAGACTGTGAGATGTCAATTTCATCTGGAATTCGCATCACTGTAAGTAATCTTCTTGGCCATCATAGCGCTAAGGTTCAGGATAGAGCAAGGACATTGTTTGACAGCTGGAAGGGAGCTGAAAATGTTGATACTGAATCTCATGATGTGGAGCTTGCTAAGGTTGACTGTGCAACCAATGAGATTGTCAAGGAGGAAAGCCAGCCATCTGCTGTGGATGAAGCTGGCAATGATAATGATAGTGCATCAGGACTAAATGGAACTGTAAACTGTCTATCGAAAAGCTCAGATAATTTGGAATGTGATGGTGTCAAAGAGGGATCAGTAAACCATTGTGCTGGTGTTCCATCTTCTGCTCAAGTAGCACCGCCTCTATGCCCTGCAGACGTGATCACTTCGGTTGAAGGACAGTCAAGTATGGTTCAGTTAACTGACTTGGCTAAAGTGGAAAAGCAGGAGCAAAACGTTAATGTCCCTCCAGAAAAACTTGGAGCACCAGAGATCTGTTCTGTGTCCTCGGAACCGGTGCCCGAGTCTGTTTCCTGTGAAGCAAAAGCACCAGAATCTGTTAAAGGACCAGCTTTGGAGCAAAATGTTGAACACAATGAGGATGAGGCTTGTCATAACTTGCCTATTTCTACTAGTATGAAGACACCTGCATCTGATAGGGAGAGTGGGGAGGATGATGCTGGAACTGTAACTGGCTTTACTCAAGTTTCCAGAGCTGTAGAGAATGACAATGACTGTTCTAATGCATTGCAAGATACATTGGTCAGTGACAGTAAATTGGGAAAGACTGAGGTGTCAGGTATGTCTGTCTGTGGAGCTGGATATGTCTCACCATCGAAGGAAGGGAAGGGTCATGTTGATAACAACAAAGTTACATCTATTGGTTCTGATTCTTGTAAACCCGAAATAGATTTCAGAAGGTCTAACATAGTTGACAAGAGAGGTTCTGGCAATGAACTTGACTGTGGCATTGTCGATCCTTTAGAATTTGCTCGTCAAGTTGCTCAGGAAGTTAATAGAGAAGTCAGCAGTTCTTCCGAAAAGTTCTCATATGGCAGAACCAGGCAACCAGGCAGTCCAGATTCTGTAAGAAAAGAGGAGGAGCTCACTCCTGTCCCACCTGAGGAGGTTTCCTCCAGACACAGCCTTGCTACTGAGGCATGTTCAATGGAGGGGCGTGCAAGTATTCTTGACAACACTGAGGCGGAGCCTGAATGCAGACCTGATGTGGTGTGCTTGGAGGTGACTGAAGCAGCTCAAGATTCAGGAGGTAATTCAGAGAAACGACCTTGTGGCTTTGATCTCAATGAAGTTGGTTCTGACGATATGGATGTTTGTGTAAATACTACATCGACCTCCATACCTGTTGTCTCTGCTTCAAGGCCTACGCCAACTCCTGGGTTGCCTGGTGCCCCTTTGCAGTTTGAGGGAACACTTGGTTGGAAAGGATCAGCTGCCACCAGTGCCTTTCGCCCTGCATCTCCTCGTAAATATTGTGATAGTGAGAGGAATCTTTCGGATACGAACATTGACACTTCAAGGCCGAGGCAGGAGTGGCTTGATATTGATCTAAACGTTGCTGAGGGTGAAGAAGGAAACGCAAAACCTATTGCTGAATCTTCAGGCAGGCGTTCTGAGCAATCAACTGTTGAATTTAGTTCTAAAAGTTCAAGCATGCTTGGATTTGATTTGAACAGTACTGGTGATGATGGTCACGGCCAACCTTCAGATCACAGGATGGAGGGACAACTCTTTCTTGGAAGAAATGGCTATTGGAGCCCATCACCTACATCATCATCATCATCAATGCAGCCATATGTTAGAAACATTGATTTGAATGACAGGCCATGCCTTCAAACTGATTTGGTAGACCTGGGGTCCTGTAAGTCTTCTCATATTATCAATGGATATGATTGTTCTAAATCACCAGATGCTCCTGTTATCTCTCTTTTGGGCGCCAAGGTAGAAGTTGGTAAAAAAGAACGTGTTCCTCAATCCTTTTTGCCGAATGGAAATGCTGTTGAACCTGCAATAGATCTTTCGATGTCAAGGACCGGTGGCACTATAGGGATGGCCCCTGCTGCATCCTTCAATCAATCATCTGTTTTTGGGTATAATGGAGTGACATCAGCATCAGCAGCACCCACAATGCCTTTTTCATCAGCCATGTACGGGTCAGGTGGCACAGTTCCATATATGGTGGACTCGAGAGGAGCTCCAGCTGTTCCACAAGTGGGTGGACCTTCATTAAATATACTTTCATCATCTTACTCTCAGCCACCACCGTTCTTTATGAACATGACGGGTACACAACTCGGTCTGAATGGATTTGGGCCTTCACGTCCTAATTTTGACCTGAACTCTGGTTTCATGATTGAGGGTGGGAATAGAGAGACATTTGCAGCCAGGCAATTTTTCTTTCCTGGTCAGGGAAGGGCTGTGGAGGAGCAAGTAAGAACCATGCCGCAGCCATCAAGTTCGGTGGTTGGTGGGAAACGAAAGGAACCAGATAGTAGTTGGGAACCCTATCCGTATAGCTACAAACATTCGCAACCTCCATGGAAGTAG 2904 0.4511 MTLEDFFTLTEMKDGLTAPSRVQELVSVMQKEKSCDVKNSADATRQWAAVASTIAATENKDCLDLFIQLDGLCFINGWLKDAQKFEVDAKDSFVEESITAMLRAVEKLHLDCEMSISSGIRITVSNLLGHHSAKVQDRARTLFDSWKGAENVDTESHDVELAKVDCATNEIVKEESQPSAVDEAGNDNDSASGLNGTVNCLSKSSDNLECDGVKEGSVNHCAGVPSSAQVAPPLCPADVITSVEGQSSMVQLTDLAKVEKQEQNVNVPPEKLGAPEICSVSSEPVPESVSCEAKAPESVKGPALEQNVEHNEDEACHNLPISTSMKTPASDRESGEDDAGTVTGFTQVSRAVENDNDCSNALQDTLVSDSKLGKTEVSGMSVCGAGYVSPSKEGKGHVDNNKVTSIGSDSCKPEIDFRRSNIVDKRGSGNELDCGIVDPLEFARQVAQEVNREVSSSSEKFSYGRTRQPGSPDSVRKEEELTPVPPEEVSSRHSLATEACSMEGRASILDNTEAEPECRPDVVCLEVTEAAQDSGGNSEKRPCGFDLNEVGSDDMDVCVNTTSTSIPVVSASRPTPTPGLPGAPLQFEGTLGWKGSAATSAFRPASPRKYCDSERNLSDTNIDTSRPRQEWLDIDLNVAEGEEGNAKPIAESSGRRSEQSTVEFSSKSSSMLGFDLNSTGDDGHGQPSDHRMEGQLFLGRNGYWSPSPTSSSSSMQPYVRNIDLNDRPCLQTDLVDLGSCKSSHIINGYDCSKSPDAPVISLLGAKVEVGKKERVPQSFLPNGNAVEPAIDLSMSRTGGTIGMAPAASFNQSSVFGYNGVTSASAAPTMPFSSAMYGSGGTVPYMVDSRGAPAVPQVGGPSLNILSSSYSQPPPFFMNMTGTQLGLNGFGPSRPNFDLNSGFMIEGGNRETFAARQFFFPGQGRAVEEQVRTMPQPSSSVVGGKRKEPDSSWEPYPYSYKHSQPPWK 967
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun9g03685 967 SUPERFAMILY Conserved domain common to transcription factors TFIIS, elongin A, CRSP70 61 154 IPR035441 -
Viun9g03685 967 MobiDBLite consensus disorder prediction 642 689 - -
Viun9g03685 967 MobiDBLite consensus disorder prediction 652 676 - -
Viun9g03685 967 Pfam TFIIS helical bundle-like domain 101 148 IPR017923 -
Viun9g03685 967 MobiDBLite consensus disorder prediction 173 192 - -
Viun9g03685 967 MobiDBLite consensus disorder prediction 451 469 - -
Viun9g03685 967 Gene3D Conserved domain common to transcription factors TFIIS, elongin A, CRSP70 17 150 IPR035441 -
Viun9g03685 967 ProSiteProfiles TFIIS N-terminal domain profile. 73 153 IPR017923 -
Viun9g03685 967 MobiDBLite consensus disorder prediction 321 340 - -
Viun9g03685 967 MobiDBLite consensus disorder prediction 608 623 - -
Viun9g03685 967 MobiDBLite consensus disorder prediction 471 486 - -
Viun9g03685 967 PANTHER TRANSCRIPTION ELONGATION FACTOR (TFIIS) FAMILY PROTEIN-RELATED 1 967 - -
Viun9g03685 967 MobiDBLite consensus disorder prediction 451 495 - -
Viun9g03685 967 MobiDBLite consensus disorder prediction 603 623 - -
Viun9g03685 967 MobiDBLite consensus disorder prediction 928 967 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun9g03685 Viun-Chr9 42087414 42092550 Dispersed/Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR IWS1 Viun9g03685 Med26 0.00014 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun9g03685 - - gmx:102669997 1397.1