Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun9g03682 ATGGCAGATGTAGAAGGAATTATATTTCAATGTCACTGTCACGTGCAAACTGAAGAAGATGGAGCGAAGGTCAAATTCAGTGACATGTTAAGGATTGATGTAACTATCAGTGTTCAATTTATACATTATTCTCATGGTATTGAAACATCAACTTTATTAAAAAGTTCAATACCTATTAGCTGTGAGAATTTCATCTTAAACAATGAAGATTTCGTAAGGAGCTTGACATCCGATCCACGCTGTTCTCATTACTTCGTCCCAGAAATGGTTGATCTTACATCAGAAACCATTGTTAACATGAGTGTCGAAATTTTAGAATTTTGCTGTGATTCGGAGTCTGTAGATTCAGAACGCCATGAATTGCCTCTCAATTTAGACATCATAGTGGATGTACTTCAAGATGGAGAAAGCGCAGAGGAAGAAGAAGAGATTGAACAAAATACAACCCAGATTCCAGCGTCTGAAGAAGCCATTAATTCCCTCAAGACGTTCACAAATTCATCTATTTTGAGGATGAAAATCGAAAAGTGCGGCATTTGCATGGAAAATTTTCCTTTCAAAGAGGATGAAGAAAGTGTGAAGTTATCGTCGATGCCTTGTGATCATGTTTTTCATCATCAGTGTATTGTACAATGGCTACACAGAAGTCACACTTGTCCTTTATGTCGTTATCCTATGCCTATTTGA 687 0.3697 MADVEGIIFQCHCHVQTEEDGAKVKFSDMLRIDVTISVQFIHYSHGIETSTLLKSSIPISCENFILNNEDFVRSLTSDPRCSHYFVPEMVDLTSETIVNMSVEILEFCCDSESVDSERHELPLNLDIIVDVLQDGESAEEEEEIEQNTTQIPASEEAINSLKTFTNSSILRMKIEKCGICMENFPFKEDEESVKLSSMPCDHVFHHQCIVQWLHRSHTCPLCRYPMPI 228
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun9g03682 228 ProSiteProfiles Zinc finger RING-type profile. 177 223 IPR001841 -
Viun9g03682 228 SMART ring_2 177 222 IPR001841 -
Viun9g03682 228 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 138 227 IPR013083 -
Viun9g03682 228 SUPERFAMILY RING/U-box 157 226 - -
Viun9g03682 228 PANTHER E3 UBIQUITIN-PROTEIN LIGASE PRAJA 125 227 - -
Viun9g03682 228 Pfam Ring finger domain 176 223 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun9g03682 Viun-Chr9 42064243 42064929 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun9g03682 136 227 C3H Transcription Factor Family AT1G18760 30.851 3.42e-11 59.3
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun9g03682 - - pvu:PHAVU_009G017600g 252.292