Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun9g03669 ATGTCGACTTCTGGCCAGGATCATCATCAATCCCAAGCTCCTCCTCCTCATCCATCTCAATTTAAATTCCACCTATTGCACTCCCCTTCTCACTTTTCTCCCCTTCCCCATTCTCTTTTTTCCAATTTCCCTTCCAGTCAAAGATATGAAAGCAGTCACACAAGTAATCTCGAAGTAGCTCCGGACATGAGTAAAACAGTTTATCTCCCCCCTCCAGTTCAAACCCAGCCTACCGAAAGAGGAAAGCAAAATGGTAAATCAAAATTTTCTAGAAACACAAAATCTGGGACTCACCGACCTAGTGCTGATTCACCGAATTCAACTGTGGTTAACAACTGTCGTTATGACAGTTCCTTAGGACTGTTGACAAAGAAATTTGTTAGCTTGATCCAAGATGCTAAGGATGGCACCCTGGATCTTAACAAAACCGCTGAGATCTTGGAGGTTCAGAAAAGGAGAATTTATGACATTACAAATGTTCTCGAAGGAGTAGGATTGATAGAGAAAACTTCAAAGAATCATATACAGTGGAAGGGATGTGATGGACTTGGACCACGAGAACTGGAAAACCAAATTAACAGTCTAAAGGCTGAAGTTGAAAGTCTATATGGCAGGGAATGTGAACTTGATGATTGTATAAGGAGAAAACAGGAGCTTCTAAGAAACCTAGAAGAAAGTGAAAGCTCCCAGAAGTACCTTTTTTTGACCAAGGAAGAGATTCTTAATCTTCCATGCTTCCAGAATCAAGAAATTATTGCAATCAAGGCTCCAAAAGCTAGTTTCATCGAGGTTCCTGATCCTGATGAGGAATCAGTTTTCCGGCAAAGGCAGTACAAAATGATTGTTAGAAGCGCCACGGGACCAATATATTTGTACCTCTTGAGCAAGGACGACTGCAAGTATGAGGATGATAGTGTCAAACGGGTGAAATTAATGGATCCATCATGGAAGAGTGAGCAATGCAGAAATAGAGGTGTGGGATTATTAGAAAGACAAGACGATGAAAAAAATACTTCTGAAAGTTTCAATTTTCATGGATCACAGGCATCTGGAATTCAAGAAATAACTCCCACTGATTTTGAAATGGAAGATGACTACTGGTTTCAGTCAGATCCTGGAGTAAGGCTAACAGAACTGTGGGAAAATGAGCCAATGATGCAGATAGATGAGTTTCAAGACTATTAA 1185 0.4051 MSTSGQDHHQSQAPPPHPSQFKFHLLHSPSHFSPLPHSLFSNFPSSQRYESSHTSNLEVAPDMSKTVYLPPPVQTQPTERGKQNGKSKFSRNTKSGTHRPSADSPNSTVVNNCRYDSSLGLLTKKFVSLIQDAKDGTLDLNKTAEILEVQKRRIYDITNVLEGVGLIEKTSKNHIQWKGCDGLGPRELENQINSLKAEVESLYGRECELDDCIRRKQELLRNLEESESSQKYLFLTKEEILNLPCFQNQEIIAIKAPKASFIEVPDPDEESVFRQRQYKMIVRSATGPIYLYLLSKDDCKYEDDSVKRVKLMDPSWKSEQCRNRGVGLLERQDDEKNTSESFNFHGSQASGIQEITPTDFEMEDDYWFQSDPGVRLTELWENEPMMQIDEFQDY 394
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun9g03669 394 Pfam E2F transcription factor CC-MB domain 195 294 IPR032198 GO:0046983
Viun9g03669 394 SMART E2F_TDP_2 114 179 IPR003316 GO:0005667|GO:0006355
Viun9g03669 394 MobiDBLite consensus disorder prediction 69 110 - -
Viun9g03669 394 MobiDBLite consensus disorder prediction 1 17 - -
Viun9g03669 394 FunFam E2F transcription factor 1 108 181 - -
Viun9g03669 394 MobiDBLite consensus disorder prediction 66 110 - -
Viun9g03669 394 PANTHER TRANSCRIPTION FACTOR E2F 63 385 IPR015633 GO:0000978|GO:0006357
Viun9g03669 394 SUPERFAMILY "Winged helix" DNA-binding domain 114 177 IPR036390 -
Viun9g03669 394 Pfam E2F/DP family winged-helix DNA-binding domain 116 179 IPR003316 GO:0005667|GO:0006355
Viun9g03669 394 CDD E2F_DD 190 297 IPR032198 GO:0046983
Viun9g03669 394 Gene3D - 186 297 - -
Viun9g03669 394 Gene3D - 109 181 IPR036388 -
Viun9g03669 394 MobiDBLite consensus disorder prediction 1 28 - -
Viun9g03669 394 Coils Coil 209 229 - -
Viun9g03669 394 SUPERFAMILY E2F-DP heterodimerization region 191 297 IPR037241 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun9g03669 Viun-Chr9 41999277 42003188 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun9g03669 17 382 E2F-DP Transcription Factor Family AT1G47870 43.243 7.13e-90 275
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF E2F-DP Viun9g03669 E2F_CC-MB 1.1e-24 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun9g03669 K06620 - gmx:100797301 543.502
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Viun9g03669 9 41999277 42003188 Viun9g03669 9 41999277 42003188 ECH