LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Viun9g03652	ATGGGCAAATCTACCTCCTGCTTCAAGCTAATCACTTGCGGTGGCGATGCGGCCGATAAAGACGACTACCACCAAGTCGCCGAGATCAAGGAGTCTAATGATAAACGTGGTTGGAGTTTCCGCAAAAAATCTGCAAGGCATCGTGTGCTTAGCAATACAGTGATAGCAGAGGCTCCATCTTCGACAAATAAAGAAAGTGCAGAATGTACTAATTTTAATTTTCAACCACTTTCTGAACCTAATGTTGTTGAGAAGGTTTACACAACGAATTGCTCTGATGAGAAGCCCCAGTTATGCTCCTTTGAAAACTCACAAGTAGCGGAAACGAATGTAATTGAAACTGAGAGGAAGGTGGATGTGAATCCAACAGAGTCTGATGTCATCGTCATCCAGACAGCTATTAGGGGGTTATTGGCTCAGAGGGAACTGCTACAGCGTAAGAAAGTAGTGAAGTTGCAAGCTGCCATTCGTGGGCACTTGGTCCGGAGCCATGCTCTGGGAACCCTGCGTTGTGTTCAATCCATAATCAAAATGCAGGTCCTTGTGCGAACTCGTCGTGCTCAGCAGTCACATCTGGAAAATCATTTAAATCACAAGGATGACAAAAAGGATGCCTCCGAAATTTTGGGAAAAGAAAATCTGATGACCAAATCAAATGTGAATTACACTTCCATTGAGAAGCTCCTTAGCAATAGGTTTGCAAGTCAGCTGTTGGAATCAACACCAAAGAACAAACCTATCCATGTCAAGTGTGATCCTTCTAAAGCCGATTCTGCTTGGAAATGGTTGGAAAGGTGGATGTCCATATCATCAAAAGATATTGCAGATTGCAATGAAAATGAAACTAGTTCTCTAACAGAACAGTCAAAGGAAAGCAAGGATAGCGCCCCTGTGTTTCAATTTGAAACTGGTATTCCATCTGAACCCTTTCCCTCAGCCACTGACTCAATACCCACTGTTGAAGATTCATCTCTGCCATCTGAGGATGAAGAAAAGTCAATTACTTATGACGCTAATAACTTTGAGTTTCAAGCAAGCTGCTCCGCACCATCTATTGTAAAAGATGACTTGGAACAGGTTCCTGCTGAAGAAAAGACTTCATATGATGCCAAAGTTACCTTAGCTGATACCAATTCCTTTCAAAATGACAATTCAGCATCAGATGCAAGTGCCGCACCAGAGCTTTACTCTCTTCACAAGGGACCTGAAATTGCCCCATCATCAGAACATACTTCTCTTCATGGGGAGCCTGAAATTACCCCACCACCAGAGCATACTTCTTTTTATCAGAAGCCCGAAATTGACAGTGAGCAGAACAAACGATCCGTGAAAAGATTTTCTTCAGACAAACTAGAGTCTGAAGGAAAGAAAACTGTGAATGGATCAAAAAAGGTCAGTAATCCTGCATTTATTGCTGCACAGTCAAAATTTGAAGAGCTGAGTTCAATAGCAAATCCAGGCAGGACAAACAATTTGTCCTACCAAGATTCAGTAGTTGAATCACAAGGAGACACCTCTTCTGTTGGCAATGACAGTGCATATAAATCAAAAGAGTTTGCATTTGAAAATCCTGCTCTTTATCTTTCTAGGCTTGCTGGTTCTGATTGTGGCACTGAACTCTCCATTTCTTCAACTCTTGATTCACCTGACATATCAGAGCCTGGTGTAATGGAAAATGAACGAGATGCCAAAGATTTGGTGGAAGGGATTGGTAATCTTGAGAACACAATAAACCGTGATGATGAGGCCAATGTTTCATCTTCCATCCCAGCTTCTAATGTAGCTACTTCTGTTTTGGATCAGTCGGAGGTTGTTGATGACATTAGTGGCAATTTGGGTCACTCTTTGGTGGCTGTGGACTCTGGAGAGCCTGCTATTAGTAATATTGAGAAAGATGCATCTGATCTGCAGAGAGAACCAGAAGAGACTGGTCTGCAAGATTTAAGATCATCTCCAGAAGCATCACCTAGAAGCCATTTGACTGTTCCTGAATCACAAGGAACCCCTTCAAGTCAAGTGTCTGTGCAACCTAAAGAGAGCAAAATCAACAAGAATAGAGCTGGCATTAAACGTCGGAGCCTACCCTTAAGTAACAAATCTCCTGCAACTCCAAATCAAGATTCGGGATCAAGAGGCAGTAGGGAGCAACTACCTAAAGATCAGCAGAATGGAAAGAGACGCACTTCCTTTGGCTCAGTAAAGCCTGATCACATTGATCAAGAACCTAGAGATAATAATACTAACAACAATTCTGTTCCCCATTTCATGCAAGCTACAGAATCTGCTAAGGCCAAGATTAATGCAAATAACTCGCCAAGATCAAGCCCAGATGTGAATGAACGGGACGTTGAAGTTAAGAAGAGGCTTTCCTTGCCTGGTGCCGCTGGTAGACAAGGATCTCCACGTATCCAGCGATCAACATCTAAGGCACAGCAGACTGCCAAAGGCAACAATGTAAACCCTCCTCAAGAGAGAAAATGGCAGAGGTGA	2490	0.4281	MGKSTSCFKLITCGGDAADKDDYHQVAEIKESNDKRGWSFRKKSARHRVLSNTVIAEAPSSTNKESAECTNFNFQPLSEPNVVEKVYTTNCSDEKPQLCSFENSQVAETNVIETERKVDVNPTESDVIVIQTAIRGLLAQRELLQRKKVVKLQAAIRGHLVRSHALGTLRCVQSIIKMQVLVRTRRAQQSHLENHLNHKDDKKDASEILGKENLMTKSNVNYTSIEKLLSNRFASQLLESTPKNKPIHVKCDPSKADSAWKWLERWMSISSKDIADCNENETSSLTEQSKESKDSAPVFQFETGIPSEPFPSATDSIPTVEDSSLPSEDEEKSITYDANNFEFQASCSAPSIVKDDLEQVPAEEKTSYDAKVTLADTNSFQNDNSASDASAAPELYSLHKGPEIAPSSEHTSLHGEPEITPPPEHTSFYQKPEIDSEQNKRSVKRFSSDKLESEGKKTVNGSKKVSNPAFIAAQSKFEELSSIANPGRTNNLSYQDSVVESQGDTSSVGNDSAYKSKEFAFENPALYLSRLAGSDCGTELSISSTLDSPDISEPGVMENERDAKDLVEGIGNLENTINRDDEANVSSSIPASNVATSVLDQSEVVDDISGNLGHSLVAVDSGEPAISNIEKDASDLQREPEETGLQDLRSSPEASPRSHLTVPESQGTPSSQVSVQPKESKINKNRAGIKRRSLPLSNKSPATPNQDSGSRGSREQLPKDQQNGKRRTSFGSVKPDHIDQEPRDNNTNNNSVPHFMQATESAKAKINANNSPRSSPDVNERDVEVKKRLSLPGAAGRQGSPRIQRSTSKAQQTAKGNNVNPPQERKWQR	829

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Viun9g03652	829	PANTHER	IQ-DOMAIN 5-RELATED	1	799	-	-
	Viun9g03652	829	MobiDBLite	consensus disorder prediction	696	729	-	-
	Viun9g03652	829	Pfam	Protein of unknown function (DUF4005)	745	811	IPR025064	-
	Viun9g03652	829	Pfam	IQ calmodulin-binding motif	146	164	IPR000048	GO:0005515
	Viun9g03652	829	Pfam	IQ calmodulin-binding motif	127	143	IPR000048	GO:0005515
	Viun9g03652	829	MobiDBLite	consensus disorder prediction	307	323	-	-
	Viun9g03652	829	MobiDBLite	consensus disorder prediction	632	646	-	-
	Viun9g03652	829	MobiDBLite	consensus disorder prediction	378	465	-	-
	Viun9g03652	829	MobiDBLite	consensus disorder prediction	303	331	-	-
	Viun9g03652	829	MobiDBLite	consensus disorder prediction	744	776	-	-
	Viun9g03652	829	Gene3D	-	124	164	-	-
	Viun9g03652	829	ProSiteProfiles	IQ motif profile.	145	174	IPR000048	GO:0005515
	Viun9g03652	829	SMART	iq_5	145	166	IPR000048	GO:0005515
	Viun9g03652	829	SMART	iq_5	122	144	IPR000048	GO:0005515
	Viun9g03652	829	MobiDBLite	consensus disorder prediction	430	459	-	-
	Viun9g03652	829	MobiDBLite	consensus disorder prediction	800	829	-	-
	Viun9g03652	829	ProSiteProfiles	IQ motif profile.	123	151	IPR000048	GO:0005515
	Viun9g03652	829	MobiDBLite	consensus disorder prediction	630	829	-	-
	Viun9g03652	829	MobiDBLite	consensus disorder prediction	648	681	-	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Viun9g03652	Viun-Chr9	41896561	41902626	Transposed

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Viun9g03652	113	829	IQD Protein Family	AT1G19870	35.262	6.04e-103	329

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Viun9g03652	-		-	var:108343123	1530.77