Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun9g03650 ATGGATGATGCTGGGCATCGTGAAAATGGTAGGCACAAAGCAGATCAGTATAAATCTGCTCAGGGGCAGTGGCTGATGCAACATCAGCCTTCCATGAAGCAAATCATGGCAATTATGGCCGAAAGAGATGCAGCCATCCAAGAAAGAAATCTGGCCATTTCTGAGAAGAAGGCAGCATATGCTGAGCGTGACATGGCATTTCTGCAGCGAGATGCTGCAATTGCTGAACGAAATAATGCAATTTTGGAACGGGATAATGCGATTGCAACTCTTCAGTATCGAGAAAGCTCGATAGGTAGTGGCAGTATGCCATCATGTCCTCCAGGATGCCAAATTTCACGTGGTGTGAAGCATATACATCATCCCCAGCAACAGGTACACCATATACCTAACATGGGTGATCCTTCTTACAACGCAAGGGAAATGCACACAACCGATGCCCTCCCTGCAGCTCCCATCACTTCTGAGGCAGGGAAATCAAGACGGGCCAAGCGGCCCAAGGAACCGAAGTCAACTTCACCTAATAAGAAGACTCCAAAAGCAGCAAAAAAAGTGAAAAAGGAGAGTGAAGACCTGAATAAGGTTATGTTTGGCAAGGCACATGAGTGGAAAAATGGTCAGGAAATGGTGAACGGAGGCGATGATCTTAACAAGCAGTTAGTAGTGTCTAAGGCTGATTGGAAAGGTCAGGACTTGGGATTGAACCAAGTGGCTTATGATGAGTCAACGATGCCAGCGCCAGTATGTTCTTGTACCGGTGTCCTGAAGCAGTGTTACAAATGGGGGAATGGAGGTTGGCAGTCTGCCTGTTGCACAACCACTCTTTCAATGTATCCACTTCCTGCAGTGCCGAACAAGAGGCATGCTCGTGTTGGAGGTCGGAAGATGAGTGGTAGCGCTTTCAACAAGCTGCTTAGTCGCCTTGCCGCAGAAGGTCACGATCTGTCAAACCCTGTTGACCTCAAAGACCATTGGGCCAAACACGGGACGAACCGATACATTACAATAAAATAG 1014 0.4763 MDDAGHRENGRHKADQYKSAQGQWLMQHQPSMKQIMAIMAERDAAIQERNLAISEKKAAYAERDMAFLQRDAAIAERNNAILERDNAIATLQYRESSIGSGSMPSCPPGCQISRGVKHIHHPQQQVHHIPNMGDPSYNAREMHTTDALPAAPITSEAGKSRRAKRPKEPKSTSPNKKTPKAAKKVKKESEDLNKVMFGKAHEWKNGQEMVNGGDDLNKQLVVSKADWKGQDLGLNQVAYDESTMPAPVCSCTGVLKQCYKWGNGGWQSACCTTTLSMYPLPAVPNKRHARVGGRKMSGSAFNKLLSRLAAEGHDLSNPVDLKDHWAKHGTNRYITIK 337
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun9g03650 337 MobiDBLite consensus disorder prediction 1 21 - -
Viun9g03650 337 Coils Coil 58 85 - -
Viun9g03650 337 MobiDBLite consensus disorder prediction 1 15 - -
Viun9g03650 337 SMART GAGA_bind_2 1 337 IPR010409 -
Viun9g03650 337 MobiDBLite consensus disorder prediction 158 174 - -
Viun9g03650 337 MobiDBLite consensus disorder prediction 146 189 - -
Viun9g03650 337 PANTHER - 1 337 IPR010409 -
Viun9g03650 337 Pfam GAGA binding protein-like family 1 337 IPR010409 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun9g03650 Viun-Chr9 41871683 41875465 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun9g03650 65 337 BBR or BPC Transcription factor family AT5G42520 65.517 1.31e-122 352
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF BBR-BPC Viun9g03650 GAGA_bind 1.4e-110 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun9g03650 - - gmx:100783502 626.32