Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun9g03634 ATGCAGCTCCCCCACCTTCCCTTTGTATTTCTCTTTCCCTCATTAACTCATTATCCTATTCCTGTTCCTATTATCACTCAGAATCCGCAGAAGCAGATAGAAAGGAACAGAAGCATAAGCATAAGCATAAGGAAGCAGAAAGCAGCAGCAACAGCTATGGCTCGTGGAAAGATCCAGATCAAGAGGATAGAGAACACCACCAACCGCCAAGTCACTTACTCCAAACGACGCAATGGCCTTTTCAAGAAGGCCAACGAGCTCACCGTTCTCTGCGATGCCAAGGTTTCTATTATTATGTTCTCCAGCACTGGCAAACTCCACGAGTACATTAGCCCCTCCACCTCAACAAAACACTTCTTTGATCAATACCAGATGACCCTAGGAGTTGATCTCTGGAACTCTCACTACGAGAATATGCAAGAGAACCTGAAGAAACTCAAAGAGGTCAATAAGAATCTTCGCAAGGAGATTAGGCAGAGGATGGGAGATTGCCTCATCGATCTGAACATGGAAGATCTAAAGCTCCTGGAGGAAGAAATGGACAAGGCCGCCAAGATTGTTCGTGAGCGTAAGTATAAAGTGATAACAAACCAGATTGACACCCAAAGGAAGAAGTTTAATAACGAGAAAGAAGTGCACAACAGGCTCTTGCGTGACTTGGATGCAAGAGCAGAAGATCCACGTTTTGCATTGATAGAGAATGGAGGAGAGTACGAGTCTGTGATCGGGTTCTCAAATTTAGGTCCACGCATGTTTGCCTTGAGCCTACAGCCAAGCCATCCTAGTGGTCATAGCGGACCAACCTCTGATCTCACCACTTACCCCTTACTTTTCTAG 837 0.4552 MQLPHLPFVFLFPSLTHYPIPVPIITQNPQKQIERNRSISISIRKQKAAATAMARGKIQIKRIENTTNRQVTYSKRRNGLFKKANELTVLCDAKVSIIMFSSTGKLHEYISPSTSTKHFFDQYQMTLGVDLWNSHYENMQENLKKLKEVNKNLRKEIRQRMGDCLIDLNMEDLKLLEEEMDKAAKIVRERKYKVITNQIDTQRKKFNNEKEVHNRLLRDLDARAEDPRFALIENGGEYESVIGFSNLGPRMFALSLQPSHPSGHSGPTSDLTTYPLLF 278
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun9g03634 278 ProSitePatterns MADS-box domain signature. 55 109 IPR002100 GO:0003677|GO:0046983
Viun9g03634 278 PANTHER SERUM RESPONSE FACTOR HOMOLOG 55 214 - -
Viun9g03634 278 SMART madsneu2 53 112 IPR002100 GO:0003677|GO:0046983
Viun9g03634 278 ProSiteProfiles K-box domain profile. 136 226 IPR002487 GO:0003700|GO:0005634|GO:0006355
Viun9g03634 278 Pfam K-box region 134 219 IPR002487 GO:0003700|GO:0005634|GO:0006355
Viun9g03634 278 Coils Coil 203 223 - -
Viun9g03634 278 Gene3D - 65 133 IPR036879 GO:0003677|GO:0046983
Viun9g03634 278 SUPERFAMILY SRF-like 55 147 IPR036879 GO:0003677|GO:0046983
Viun9g03634 278 ProSiteProfiles MADS-box domain profile. 53 113 IPR002100 GO:0003677|GO:0046983
Viun9g03634 278 PRINTS MADS domain signature 75 90 IPR002100 GO:0003677|GO:0046983
Viun9g03634 278 PRINTS MADS domain signature 55 75 IPR002100 GO:0003677|GO:0046983
Viun9g03634 278 PRINTS MADS domain signature 90 111 IPR002100 GO:0003677|GO:0046983
Viun9g03634 278 Coils Coil 129 163 - -
Viun9g03634 278 CDD MADS_MEF2_like 54 132 IPR033896 GO:0000977|GO:0045944
Viun9g03634 278 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 62 109 IPR002100 GO:0003677|GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun9g03634 Viun-Chr9 41768057 41771411 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun9g03634 53 277 MADS-box Gene Family AT3G54340 55.411 1.55e-90 266
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-MIKC Viun9g03634 K-box 1.4e-17 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun9g03634 K09264 - gmx:547720 395.971