Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun9g03630 ATGGCCGGGTTCTTCTCTCTAGGTGGAACTAGAAGGGGAGGTCCACAAAACAAGGAAGAGGGAGAGGTGGAAAAAGGAGATAACAATAACAACACCAACAACAGCAACAGCGGGAATAACCTATTGTTGTTCAGGAACGAGGAGATCTACAACAAGGGGTTCGAGATATGGCCAGAGTCGTATCAGGCTCAAGCTGCACCCCAAAACCTGAGCAACTACTTTGCGTTTGGAGTGGGTCCTAGTCGCAGGAACTGCTCGAGCGTGAACGAGGAGGAGGTTTCGCTCTGTGTGTCTGATGAGTCTACGAGATTTGGATTAACTGTCATGAGGTCCGGAGGTGCAGGAAGCAGCGGCATGAACTGTCAGGACTGTGGTAACCAAGCCAAGAAAGATTGTACACATCTCAGATGCAGAACCTGCTGTAAGACCCGAGGGTTTCAGTGCCAAACCCACGTTAAGAGCACTTGGGTTCCAGCAGCCAAACGCCGCGAACGACAACAACAACTCGCTGCCTTGCACAACCCACAACAATTTCGTCCACACAATATTCCCAAACGATACCATACAGACACTCAACTCCTCTCCGCTCCACAACCCATCGCAGGGTTAGAGCTGGGGCAATTCCCATCTGAAGTGAGCACTTCGGCTGTGTTTCGGTGTGTGAGAGTGAGCGCAGTGGACGCTTCGGATGAACAGTGCGCGTATCAAACCTCTGTCAACATCGGAGGGCATGTTTTCAAGGGAATTCTCTACGATCAAGGTCCTGAAAGTTCTTACACCAGTGCAGTTACTGAGGGTTCCTCCGGTGGTGAACCCCGACATTTTGGTTTAATAACCGCCGCAGCCGCAGCCACGGCCACAACAGCCGGTGGAAACAACCTGTTTGACCCTTCACTTTACCCCGCTCCGCTGAATGCTTTCATGTCTGGTACACAATTCTTCCAACCCCCAAGGTCCTAA 960 0.5135 MAGFFSLGGTRRGGPQNKEEGEVEKGDNNNNTNNSNSGNNLLLFRNEEIYNKGFEIWPESYQAQAAPQNLSNYFAFGVGPSRRNCSSVNEEEVSLCVSDESTRFGLTVMRSGGAGSSGMNCQDCGNQAKKDCTHLRCRTCCKTRGFQCQTHVKSTWVPAAKRRERQQQLAALHNPQQFRPHNIPKRYHTDTQLLSAPQPIAGLELGQFPSEVSTSAVFRCVRVSAVDASDEQCAYQTSVNIGGHVFKGILYDQGPESSYTSAVTEGSSGGEPRHFGLITAAAAATATTAGGNNLFDPSLYPAPLNAFMSGTQFFQPPRS 319
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun9g03630 319 NCBIfam putative zinc finger domain, LRP1 type 120 162 IPR006510 -
Viun9g03630 319 MobiDBLite consensus disorder prediction 1 39 - -
Viun9g03630 319 Pfam Domain of unknown function (DUF702) 118 256 - -
Viun9g03630 319 PANTHER PROTEIN LATERAL ROOT PRIMORDIUM 1 1 305 IPR007818 GO:0003700|GO:0006355
Viun9g03630 319 NCBIfam LRP1 C-terminal domain 207 255 IPR006511 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun9g03630 Viun-Chr9 41743166 41746070 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun9g03630 1 319 C2H2 Transcription Factor Family AT1G75520 43.968 1.69e-80 246
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF SRS Viun9g03630 DUF702 6.4e-61 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun9g03630 - - gmx:100818588 448.358
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Viun9g03630 9 41743166 41746070 Viun2g01914 2 27891321 27893998 ECH
Viun9g03630 9 41743166 41746070 Viun9g03888 9 43142132 43143448 ECH
Viun9g03630 9 41743166 41746070 Viun9g03630 9 41743166 41746070 ECH
Viun8g00144 8 936338 938853 Viun9g03630 9 41743166 41746070 PCT