Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun9g03622 ATGTCCACAATGCTGAAATCAGGCATGAAAATTGAGGAGAAAAAAGGGAAGAAAACAGCACAGGCCAGCTCCAGAAAGGGGTGCATGAGAGGTAAAGGAGGTCCCGAGAATGCCACTTGCACCTACAAAGGTGTGAGGCAGAGAACCTGGGGGAAATGGGTTGCTGAAATCCGTGAACCCAATCGTGGTGCTAGACTCTGGCTAGGGACATTTGAAACCTCTCATGACGCTGCTTTGGCTTATGATGCTGCAGCACGTAAGCTTTATGGCCCTGATGCCAAACTCAATTTACCAGACCTTTCTTTGCCCCCACTGAAACCACCTCAGTTTCCCCCACCACCACCTCCTGGTACCAGCACTCAAACTCTTGATATGGAGAATCTGCAACAGCCCCTGATGCAAAACAACATAGACATTCCAACTTGTTCTAATTTCAATTTCAACCCTGCAGTCTCCATGGCCTCTCAGGAGGTTGGAGTCACTCCAATTTACACCAGTGATTGCATCGTGTCCCTTCCCTTGGACACCAATCCTAAGCCAATTGCAACCTACCCAAAACTTGAGGGGATTGAGGGAGAGTTTTCTCCATCTTGGGAGACAATGAACGAGACTTTACCTGTTTTTGATGATTCTATCTGGGCCGAAGCTGCTATGTCTCTAGATCTTCCTCTAATTGCAGCAGAGAATGAGATTTACACACCGGAGAACAACAACTTGGCAGATGTGGATATGTGGGACCCTCAAACTCCATGGTGCATGTAA 762 0.4764 MSTMLKSGMKIEEKKGKKTAQASSRKGCMRGKGGPENATCTYKGVRQRTWGKWVAEIREPNRGARLWLGTFETSHDAALAYDAAARKLYGPDAKLNLPDLSLPPLKPPQFPPPPPPGTSTQTLDMENLQQPLMQNNIDIPTCSNFNFNPAVSMASQEVGVTPIYTSDCIVSLPLDTNPKPIATYPKLEGIEGEFSPSWETMNETLPVFDDSIWAEAAMSLDLPLIAAENEIYTPENNNLADVDMWDPQTPWCM 253
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun9g03622 253 SMART rav1_2 41 104 IPR001471 GO:0003700|GO:0006355
Viun9g03622 253 Pfam AP2 domain 41 90 IPR001471 GO:0003700|GO:0006355
Viun9g03622 253 ProSiteProfiles AP2/ERF domain profile. 41 98 IPR001471 GO:0003700|GO:0006355
Viun9g03622 253 Gene3D AP2/ERF domain 41 99 IPR036955 GO:0003700|GO:0006355
Viun9g03622 253 PRINTS Ethylene responsive element binding protein signature 42 53 IPR001471 GO:0003700|GO:0006355
Viun9g03622 253 PRINTS Ethylene responsive element binding protein signature 64 80 IPR001471 GO:0003700|GO:0006355
Viun9g03622 253 MobiDBLite consensus disorder prediction 101 119 - -
Viun9g03622 253 CDD AP2 40 100 IPR001471 GO:0003700|GO:0006355
Viun9g03622 253 SUPERFAMILY DNA-binding domain 41 99 IPR016177 GO:0003677
Viun9g03622 253 MobiDBLite consensus disorder prediction 99 121 - -
Viun9g03622 253 PANTHER DEHYDRATION-RESPONSIVE ELEMENT-BINDING PROTEIN 2C 15 135 - -
Viun9g03622 253 MobiDBLite consensus disorder prediction 1 40 - -
Viun9g03622 253 FunFam Ethylene-responsive transcription factor 2 40 99 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun9g03622 Viun-Chr9 41673449 41675421 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun9g03622 1 99 AP2-EREBP Transcription Factor Family AT1G75490 75.758 1.16e-50 163
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Viun9g03622 AP2 3.2e-14 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun9g03622 - - gmx:100790057 338.961