Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun9g03607 ATGGCTACTCCGGTTGATCCTCCTAATGGAATCAGGAATGAAGGGAAGCATTATTTCTCCATGTGGCAAGCTTTGTTTGAGATTGATTCAAAATACGTGCCAATCAAGCCGATTGGTCGCGGTGCATACGGGATCGTGTGCTCTTCTGTGAATAAAGACACCAACGAGAAGGTTGCCATAAAAAAAATACAGAATGCCTTTGAGAACCGGGTTGATGCTTTGAGAACTCTGCGTGAACTCAAGCTTCTTCGCCACCTTCACCATGAGAATGTCATTGCTTTGAAGGATATTATGATGCCTGTTCATAGGAATAGTTTCAAGGATGTCTATCTGGTTTATGAACTCATGGACACAGATTTGCACCAGATTATTAAGTCTTCTCAAGCACTGTCTAACGATCACTGCCAGTATTTCCTCTTTCAGTTGCTTCGTGGCTTGAAATATCTTCATTCTGCTAACATCCTTCATCGTGACTTGAAACCTGGGAATCTTCTGATCAACGCAAACTGTGACCTAAAAATATGTGATTTTGGGTTAGCAAGAATTAACTGCAGCAAGAACCAGTTCATGACCGAGTATGTTGTGACTCGGTGGTACAGGGCACCAGAGCTCCTACTCTGCTGTGACAACTACGGGACATCAATTGATGTTTGGTCTGTTGGATGCATCTTTGCTGAGCTTCTTGGCCGAAAACCGATTTTTCCTGGTTCAGAGTGTCTCAACCAGCTGAAATTGATCATCAATACCCTTGGTAGTCAGAGGGAGGAGGACATTGAGTTCATTGACAATCCAAAGGCAAAAAAGTATATCAAGTCACTTCCTTCTTCTCCTGGAACCCCCTTATCGAGACTTTATCCTAATGCACATCCTCTGGCAATTGATCTTCTGGAAAAGATGCTTGTTTTCGATCCAACAAAGAGGATCAGTGTCACTGAAGCGCTTCAACACCCTTTCATGGCCCCTCTCTACGATCCTAACTGTGACCCCCCAGCTGTGATTCCAATTGATCTTGACATTGACGAGGATCTGGGGGAAGAGATGATAAGGGAGATGATGTGGAAAGAAATGCTTCATTACCATCCTGAAGCTGCTGTAGAAAGTGCAGGGCTGTGCTAA 1116 0.4391 MATPVDPPNGIRNEGKHYFSMWQALFEIDSKYVPIKPIGRGAYGIVCSSVNKDTNEKVAIKKIQNAFENRVDALRTLRELKLLRHLHHENVIALKDIMMPVHRNSFKDVYLVYELMDTDLHQIIKSSQALSNDHCQYFLFQLLRGLKYLHSANILHRDLKPGNLLINANCDLKICDFGLARINCSKNQFMTEYVVTRWYRAPELLLCCDNYGTSIDVWSVGCIFAELLGRKPIFPGSECLNQLKLIINTLGSQREEDIEFIDNPKAKKYIKSLPSSPGTPLSRLYPNAHPLAIDLLEKMLVFDPTKRISVTEALQHPFMAPLYDPNCDPPAVIPIDLDIDEDLGEEMIREMMWKEMLHYHPEAAVESAGLC 371
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun9g03607 371 SUPERFAMILY Protein kinase-like (PK-like) 25 326 IPR011009 -
Viun9g03607 371 FunFam Mitogen-activated protein kinase 116 345 - -
Viun9g03607 371 ProSitePatterns Serine/Threonine protein kinases active-site signature. 154 166 IPR008271 GO:0004672|GO:0006468
Viun9g03607 371 ProSiteProfiles Protein kinase domain profile. 32 319 IPR000719 GO:0004672|GO:0005524|GO:0006468
Viun9g03607 371 CDD STKc_TEY_MAPK 26 361 - -
Viun9g03607 371 SMART serkin_6 32 319 IPR000719 GO:0004672|GO:0005524|GO:0006468
Viun9g03607 371 Gene3D Transferase(Phosphotransferase) domain 1 116 345 - -
Viun9g03607 371 ProSitePatterns Protein kinases ATP-binding region signature. 38 62 IPR017441 GO:0005524
Viun9g03607 371 Pfam Protein kinase domain 33 319 IPR000719 GO:0004672|GO:0005524|GO:0006468
Viun9g03607 371 Gene3D Phosphorylase Kinase; domain 1 19 355 - -
Viun9g03607 371 FunFam Mitogen-activated protein kinase 18 126 - -
Viun9g03607 371 ProSitePatterns MAP kinase signature. 67 170 IPR003527 GO:0004707|GO:0005524|GO:0006468
Viun9g03607 371 PANTHER MITOGEN-ACTIVATED PROTEIN KINASE 31 336 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun9g03607 Viun-Chr9 41585611 41588288 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun9g03607 1 370 MAP Kinase Gene Family AT1G10210 85.676 0.0 679
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CMGC_MAPK Viun9g03607 Pkinase 3.8e-71 CL0016