Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun9g03563 ATGGCGGAGCCTCAGAATCCTTCACCATTCACACATTCTTCAGCTTCGGAAATCGCACCACAACCACAACCTCTGCCACCTCCTCCCAAACGGAAGCGAAACCTCCCTGGAATGCCAGATCCAGATGCTGAAGTGATTGCTTTGTCACCGAAGACACTGATGGCCACGAACCGTTTCGTCTGCGAGATCTGTAACAAAGGGTTCCAGCGCGATCAGAACCTGCAGCTTCACCGGCGCGGTCACAACTTGCCGTGGAAGCTGCGGCAGCGGGGGAGCAAGGAACCGCGGAAGAAAGCGTACGTGTGCCCCGAGCCTTCGTGCGTCCACCACAACCCCGCTAGGGCGCTCGGCGACCTCACCGGCATCAAGAAGCACTTCTGCAGAAAACACGGCGAGAAAAAGTGGAAATGCGAACGCTGCTCTAAGAAATACGCTGTACAGTCGGACTGGAAAGCCCATACGAAAACCTGTGGCAGCAGAGAGTACCGATGCGACTGCGGCACCTTGTTCTCTAGGAGGGATAGTTTCATCACGCACAGAGCATTCTGCGATGTATTAGCGCAAGAGAGCGCCAGGACCAATGTCCAAGCCCAGGCCCAGGCCCAGGTCCAGAATGTTAGCAGTAGCAACGCTGATGTGGCTTCTTCGCCCCCTGCGCCTCCACTTACTCCCTCTGCGTCTGTGGTGTCTCCAACCTTGTCCATTCAGAGCTCAGAAATTCCAGAAAACCCAAGGAAGCTGTCACCGATGTCTCCAAAAGCAACGTGCTTCGTGACAAGCAGCACCCCTTCCAGCTCCAGTTCTTGCACCACTGTTTTCGCAAGTGTGTTGGCACCGTCCACAACGACAACTCAGTCACAGTCTCAATCACCGTCACCATCAACTTCCTCATTCTTCAACCTCATGTCAAGTTTGGCTCGCTCCGATAACCCTAACGCCATCACTAATCTGAGAGAACCCACATCCCTCTCCCTGTCCTCACCACTATATCTCTCCAACAACGACCCTTCCCACTTCACAGCATCTCAACCTGCACTATCTGCCACTGCATTGCTCCAAAAAGCAGCTCAAATGGGTGCATCCAGTGCTTCCCTTCTTCGTGGCCTAGGCTTAGCAACGACATCACCATCATCCATGGGGAAAGACGAGGGTTTTAACATGAATGCAACCGCAACAGCACAATGGAACGGCCAAGTAAAGCAAGAGAACCAGCCCGTGGTGGATAACCTTGGGCTTGGGCTTCCCTGTGGGAGTGATGTGATGCTGGGCCCTTCTACCCCATTCGTGGGCCAGCCAGTGACCCGTGATCTTCTCGGTCTTAGCATCGGTGGCGGAGCAAGCAGGGGTGGTCTCTCTGCTTTGGTCACGTCTTTCGGAGGGAACTTTGATTCACCCGGTGATGGAGGAGTTCACCGGTAG 1419 0.5455 MAEPQNPSPFTHSSASEIAPQPQPLPPPPKRKRNLPGMPDPDAEVIALSPKTLMATNRFVCEICNKGFQRDQNLQLHRRGHNLPWKLRQRGSKEPRKKAYVCPEPSCVHHNPARALGDLTGIKKHFCRKHGEKKWKCERCSKKYAVQSDWKAHTKTCGSREYRCDCGTLFSRRDSFITHRAFCDVLAQESARTNVQAQAQAQVQNVSSSNADVASSPPAPPLTPSASVVSPTLSIQSSEIPENPRKLSPMSPKATCFVTSSTPSSSSSCTTVFASVLAPSTTTTQSQSQSPSPSTSSFFNLMSSLARSDNPNAITNLREPTSLSLSSPLYLSNNDPSHFTASQPALSATALLQKAAQMGASSASLLRGLGLATTSPSSMGKDEGFNMNATATAQWNGQVKQENQPVVDNLGLGLPCGSDVMLGPSTPFVGQPVTRDLLGLSIGGGASRGGLSALVTSFGGNFDSPGDGGVHR 472
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun9g03563 472 MobiDBLite consensus disorder prediction 1 42 - -
Viun9g03563 472 MobiDBLite consensus disorder prediction 202 216 - -
Viun9g03563 472 PANTHER SERINE/THREONINE-PROTEIN KINASE RIO 11 441 IPR031140 -
Viun9g03563 472 FunFam protein indeterminate-domain 5, chloroplastic-like 113 192 - -
Viun9g03563 472 ProSiteProfiles Zinc finger C2H2 type domain profile. 59 81 IPR013087 -
Viun9g03563 472 Gene3D Classic Zinc Finger 113 193 - -
Viun9g03563 472 MobiDBLite consensus disorder prediction 1 19 - -
Viun9g03563 472 ProSitePatterns Zinc finger C2H2 type domain signature. 61 81 IPR013087 -
Viun9g03563 472 Gene3D Classic Zinc Finger 39 106 - -
Viun9g03563 472 Pfam Zinc-finger of C2H2 type 59 81 - -
Viun9g03563 472 SMART c2h2final6 59 81 IPR013087 -
Viun9g03563 472 SMART c2h2final6 135 155 IPR013087 -
Viun9g03563 472 SMART c2h2final6 100 130 IPR013087 -
Viun9g03563 472 FunFam protein indeterminate-domain 12-like 38 106 - -
Viun9g03563 472 MobiDBLite consensus disorder prediction 226 244 - -
Viun9g03563 472 MobiDBLite consensus disorder prediction 20 34 - -
Viun9g03563 472 SUPERFAMILY beta-beta-alpha zinc fingers 58 155 IPR036236 -
Viun9g03563 472 MobiDBLite consensus disorder prediction 202 252 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun9g03563 Viun-Chr9 41351869 41355131 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun9g03563 30 440 IDZ Gene Family AT5G66730 50.985 2.32e-132 390
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Viun9g03563 zf-met 0.0034 CL0361
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun9g03563 K25869 - gmx:100800089 676.781
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Viun9g03563 9 41351869 41355131 Viun9g03563 9 41351869 41355131 ECH