Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun9g03538 ATGATCACTACACAAAAATACCCGCTTTTCTTGTTCACCTTAGTAGTGGGTGAATTAATATCTTTCATTCCATTAACCAGTGCCCAATTGCAGCATCACGAGTGCCGCCAAACATGCGGTTCCTCCGATCCGTTTCCTTACCCTTTCGGATTCTCCTCCGGATGCTTAATCCGTTTGAATTGCACCGCCGGCAGAGCCTCCGTCGGAGAATTCCCCATCCAAAAGGTCACCATATACAGCATCATCGTCACCATCGAAGCTCAGTGCAGTCGTCCGTTCGACACGTTTCGCCAACTCTTCAGCCACAAATACGCTCCCACTTCGCGAAACGTGATTCTGTTAGATAACTGTACCGGAACGCCCTTGCCCTGTTCCATTCCGGGGAATCTGATTCGGACCCACTTCGAATCCGTGGGATGCAGCGACCCAGCAGCGGACAATTTAACTTGCTACTTCGAGAACAAAACGAGCGGTTTCTTGAATCGCCGAGAATTGGATCCTACCGGGTGCAAGTACTTTACGTCATCTCTTTCATTCCCAGATGTTACAAGCGTCTCCGGTGAGCCTCTGTCTTTGGAAGTAAATACAATCGAACTTGGATGGTGGGTCCAGGGAGATCGATGTCCGTGTTCTGATCACGCCAATTGTACCACGCTTCAATCCCCGGTTGACGGAAAGCAAGGTTTCCGCTGTGCCTGCCGCGACGGCTTCGTCGGCGACGGGTTTTTGGCCGGAACAGGTTGCCGGAAAGCCTCGTCATGCAACCCAGCGAAGTATTTATCTGGCCGATGTGGAGGAACAACCAGATTCATTGTCTTAATCGGAGGATTTGTCGTAGGCGTTTCACTGATTATTACTGCGTGTTCACTGTGCTGTTTCTTCCGCCGGCGCACCAAATTGAGAGTCACAAAGAGCACAAAAAGACGATTAACCGAAGCCACCGGAAACAATGGTGTTCCTATCTATCCCTACAAAGACATTGAGAGAGCCACGAATAGTTTCTCAGAGAAACAACGGTTGGGAACTGGGGCGTACGGCACGGTTTATGCAGGGAAATTGTACAGCGACGAATGGGTTGCCATCAAAAGAATAAAACACAGAGACACTGACAGTATTGAACAGGTAATGAACGAGATCAAGCTCCTGTCCTCTGTGAGCCACACCAACTTGGTTCGCTTGTTGGGTTGCTCCATTGAATACGGAGAACAAATCCTTGTGTACGAGTTCATGCCCAACGGAACACTGAGTCAGCATTTGCAGAAGGAGAGAGGCCAAGGTCTTCCTTGGTCTGTTCGACTCACCATTGCCACTGAAACCGCACAAGCCATCGCACATCTTCATTCTGCCATTAATCCCCCCATTTACCACCGAGACATCAAATCCAGCAACATACTTTTGGACCACAATTTCAGGTCAAAAGTGGCAGACTTTGGTCTTTCTAGACTTGGAATGACCGAAATATCGCACATTTCAACTGCCCCACAGGGAACTCCTGGGTATGTGGATCCACAATACCATCAAGATTTTCACCTCTCTGACAAGAGCGATGTTTATAGTTTTGGTGTTGTTCTTGTTGAGATCATATCTGGGCTAAAAGTGGTAGACTTTTCACGTCCTCCTAATGAAGTGAACTTGGCTTCTCTTGCAGCAGATAGGATTGGAAAAGGGCTTTTGGATGAGATTATAGACCCATTCCTTGAACCCGAAGCAAGAAGTGACGCTCGAACCCTTTCCGCCATACACAAGGTGGCTGAGTTGGCATTTAGATGCCTAGCGTTCCATAGGGACATGAGACCTTCGATGACGGAAGTGGCTTGTGAGTTGGAGCAACTCAGGTTGAGTCAATGGACAACATTGGGAGACAACAATGGTGCAACCTCAACGGAGTTGTCCTCTTGCTCTTCCTCCTCCAATGAAAGTGAGAAACCACTGAGTACCACAGCGAAGAACGTTGGAGAAAAGGGTAAAGGGTACCTTAAGATTCAAACTAGGCCTATTACTTTAAAATCATTACAAAGGCCTAATAGTAATTCACCAGTCTCAGTGCAAGACCAAGAGTTATGGCTTAGTGAACAGAGTTCTCCTTCATCAAATAGTTTTCCAAGCAAGTCATTTGATTGA 2121 0.4757 MITTQKYPLFLFTLVVGELISFIPLTSAQLQHHECRQTCGSSDPFPYPFGFSSGCLIRLNCTAGRASVGEFPIQKVTIYSIIVTIEAQCSRPFDTFRQLFSHKYAPTSRNVILLDNCTGTPLPCSIPGNLIRTHFESVGCSDPAADNLTCYFENKTSGFLNRRELDPTGCKYFTSSLSFPDVTSVSGEPLSLEVNTIELGWWVQGDRCPCSDHANCTTLQSPVDGKQGFRCACRDGFVGDGFLAGTGCRKASSCNPAKYLSGRCGGTTRFIVLIGGFVVGVSLIITACSLCCFFRRRTKLRVTKSTKRRLTEATGNNGVPIYPYKDIERATNSFSEKQRLGTGAYGTVYAGKLYSDEWVAIKRIKHRDTDSIEQVMNEIKLLSSVSHTNLVRLLGCSIEYGEQILVYEFMPNGTLSQHLQKERGQGLPWSVRLTIATETAQAIAHLHSAINPPIYHRDIKSSNILLDHNFRSKVADFGLSRLGMTEISHISTAPQGTPGYVDPQYHQDFHLSDKSDVYSFGVVLVEIISGLKVVDFSRPPNEVNLASLAADRIGKGLLDEIIDPFLEPEARSDARTLSAIHKVAELAFRCLAFHRDMRPSMTEVACELEQLRLSQWTTLGDNNGATSTELSSCSSSSNESEKPLSTTAKNVGEKGKGYLKIQTRPITLKSLQRPNSNSPVSVQDQELWLSEQSSPSSNSFPSKSFD 706
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun9g03538 706 SMART serkin_6 334 617 IPR000719 GO:0004672|GO:0005524|GO:0006468
Viun9g03538 706 MobiDBLite consensus disorder prediction 665 706 - -
Viun9g03538 706 FunFam Wall-associated receptor kinase-like 14 isoform A 208 243 - -
Viun9g03538 706 MobiDBLite consensus disorder prediction 625 647 - -
Viun9g03538 706 Pfam Protein tyrosine and serine/threonine kinase 337 605 IPR001245 GO:0004672|GO:0006468
Viun9g03538 706 FunFam Wall-associated receptor kinase-like 20 410 620 - -
Viun9g03538 706 ProSiteProfiles Protein kinase domain profile. 334 613 IPR000719 GO:0004672|GO:0005524|GO:0006468
Viun9g03538 706 ProSitePatterns Protein kinases ATP-binding region signature. 340 362 IPR017441 GO:0005524
Viun9g03538 706 ProSitePatterns Serine/Threonine protein kinases active-site signature. 454 466 IPR008271 GO:0004672|GO:0006468
Viun9g03538 706 Gene3D Laminin 202 245 - -
Viun9g03538 706 FunFam Wall-associated receptor kinase-like 14 301 409 - -
Viun9g03538 706 Gene3D Phosphorylase Kinase; domain 1 295 409 - -
Viun9g03538 706 MobiDBLite consensus disorder prediction 625 706 - -
Viun9g03538 706 Gene3D Transferase(Phosphotransferase) domain 1 410 629 - -
Viun9g03538 706 PANTHER LEAF RUST 10 DISEASE-RESISTANCE LOCUS RECEPTOR-LIKE PROTEIN KINASE-LIKE 1.4 17 652 IPR044652 GO:0004672
Viun9g03538 706 SUPERFAMILY Protein kinase-like (PK-like) 313 609 IPR011009 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun9g03538 Viun-Chr9 41196328 41202079 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun9g03538 1 700 Receptor kinase-like Gene Family AT2G23450 50.492 0.0 658
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_WAK_LRK10L-1 Viun9g03538 PK_Tyr_Ser-Thr 1.2e-41 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun9g03538 - - gmx:100777480 1135.94