Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun9g03529 ATGGTTTCGAGCTTCTTTCTGTTGCTCTCCCTATACCTCCTCTCATCACTATCATCTTCCTCCTATGGACTTTCCGATGTCGAAGCCTCTTTCATTGCTCGTCGCCAAATGATGCACTTGGAGGAGAATGAGAAATTGCCCGAGAACTACGTAAATACCTACAAAACAAACCTAAAATTTTCTCACACCAGGCTAAAAGCCGCATACATTGCACTCGAGGCGTGGAAAAAAGCTATCTACTCAGACCCCACAAATTTCACAGCAAATTGGTCGGGCCAAGACGTTTGCTCCTACAATGGAGTTTTTTGCGCACCGGCTCTAGATGACAAAAATATCGAAGTTGTGGCTGGGATTGACCTTAACCATGCAGACATCGCAGGTTACATTCCCCCAGAAGTTGGTCTGTTAACTGACCTTGCACTTCTGCATATAAACTCCAACAGGTTTTGTGGGATCGTCCCAAACAGCTTTACCAACCTTAAGATTCTGTATGAGCTAGACTTCAGTAACAACCGCTTTGTCGGGCGGTTCCCTGAACACGTGCTTGAACTTACAGAACTCAGATACATTGACCTCAGGTTCAATAACTTTGAAGGGGAATTGCCTCCTGCGCTTTTCAACAAAAGTTTCGACGCTATATTTATGAACAACAACCGCTTCTCCTCCAATATTCCTGAGAACATAGGATCAACCCCAGCCACGGTTGTGGTTATTGCCAATAACAATTTCTCAGGCTGCGTGCCTTCCAGCATCGGCGAAGTGAAGTCACTCACCGAGTTTGTTATGATCAACAACAACCTCACCGGTTGCTTGCCAGAAGAAATTGGAAAACTCGAAAAAGTTTCGGTGTTTGACATAAGCTACAACAACTTCGTTGGCGTGTTGCCGAGGAACTTCAATGGGCTTAAGAACGTTGAGTACTTGTCCATTTCGCATAACAAGTTCACAGGTTTTGTCCCGCGTAATGTCTGCACCTTGCCCAATTTGGTGAACTTCACATTCTCCAATAACTATTTCAACGGAGAGGAAGAAGGTTGCGCACCTCAAAAGAAAGAGCCTCTGTTTGAGGATGAGAACAATTGCATACCAAATAGGCCAAAGCAAAAACAGTCGAACGTTTGCAACGAGGTGATAAGCAAGCCTGTGGATTGTGGCAAAGCCAAGTGTGGCCATGGGGGACACACCCCATCAACGCCGTCTAAGCACACACCATCGCCTCCTAAAACTGAGAAACAGACACCGACACCAGTGCCACAAGCTCCACCCACCCCTCAACAGCAACAGCCACAACCACCACCTACCCCAACTCCACAACAACAACAATCCACTCCCCCACCTACCCCTCCAACACCCACGCCTCAGCAACCCACACCCTCACCACCACAGGAAGAACCCCACGGCGAATCACCCAAGAACCGAGAGAGAACTCCACCAACGCCTGTCTACTCTCCTCCACCACCACCTGTTCACTCTCCACCCCCTCCTGTCCACTCTCCACCCCCACCCGTTTACTCTCCTCCACCACCGGTCTACTCCCCTCCTCCCCCAGTCCATTCTCCACCACCACCCGTCCAGTCTCCTCCTCCACCCGTCTACTCTCCTCCTCCACCAGTTTTCTCTCCACCTCCACCTGTTTTTTCTCCTCCTCCCCCAGTTCACTCTCCACCTCCACCCGTTTACTCTCCACCACCACCTGTTCACTCTCCACCACCTCCAGTCTACTCTCCACCGCCACCAGTGCAGTCTCCACCACCTCCTTCACCAACTCCTTCGCCTCCTATGGAAGACGTCTTCCTCCCCCCTCACTTCGGCTCTTCTTATGCTTCACCCCCTCCACCTACCATTGCCGGTTACTAG 1857 0.5008 MVSSFFLLLSLYLLSSLSSSSYGLSDVEASFIARRQMMHLEENEKLPENYVNTYKTNLKFSHTRLKAAYIALEAWKKAIYSDPTNFTANWSGQDVCSYNGVFCAPALDDKNIEVVAGIDLNHADIAGYIPPEVGLLTDLALLHINSNRFCGIVPNSFTNLKILYELDFSNNRFVGRFPEHVLELTELRYIDLRFNNFEGELPPALFNKSFDAIFMNNNRFSSNIPENIGSTPATVVVIANNNFSGCVPSSIGEVKSLTEFVMINNNLTGCLPEEIGKLEKVSVFDISYNNFVGVLPRNFNGLKNVEYLSISHNKFTGFVPRNVCTLPNLVNFTFSNNYFNGEEEGCAPQKKEPLFEDENNCIPNRPKQKQSNVCNEVISKPVDCGKAKCGHGGHTPSTPSKHTPSPPKTEKQTPTPVPQAPPTPQQQQPQPPPTPTPQQQQSTPPPTPPTPTPQQPTPSPPQEEPHGESPKNRERTPPTPVYSPPPPPVHSPPPPVHSPPPPVYSPPPPVYSPPPPVHSPPPPVQSPPPPVYSPPPPVFSPPPPVFSPPPPVHSPPPPVYSPPPPVHSPPPPVYSPPPPVQSPPPPSPTPSPPMEDVFLPPHFGSSYASPPPPTIAGY 618
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun9g03529 618 PRINTS Proline rich extensin signature 398 410 - -
Viun9g03529 618 PRINTS Proline rich extensin signature 437 449 - -
Viun9g03529 618 PRINTS Proline rich extensin signature 449 470 - -
Viun9g03529 618 PRINTS Proline rich extensin signature 417 433 - -
Viun9g03529 618 Pfam Leucine rich repeat 139 197 IPR001611 GO:0005515
Viun9g03529 618 Pfam Leucine rich repeat 281 338 IPR001611 GO:0005515
Viun9g03529 618 Gene3D Ribonuclease Inhibitor 68 230 IPR032675 -
Viun9g03529 618 MobiDBLite consensus disorder prediction 477 597 - -
Viun9g03529 618 MobiDBLite consensus disorder prediction 409 465 - -
Viun9g03529 618 Gene3D Ribonuclease Inhibitor 231 349 IPR032675 -
Viun9g03529 618 SUPERFAMILY L domain-like 74 344 - -
Viun9g03529 618 Pfam Leucine rich repeat N-terminal domain 71 103 IPR013210 -
Viun9g03529 618 MobiDBLite consensus disorder prediction 388 618 - -
Viun9g03529 618 FunFam Leucine-rich repeat receptor protein kinase EMS1 233 322 - -
Viun9g03529 618 FunFam Leucine-rich repeat extensin-like protein 1 69 230 - -
Viun9g03529 618 PANTHER LEUCINE-RICH REPEAT EXTENSIN-LIKE PROTEIN 3-RELATED 6 501 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun9g03529 Viun-Chr9 41115401 41117830 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun9g03529 6 589 Trihelix Transcription Factor Family AT3G19020 47.030 3.58e-167 499
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun9g03529 - - gmx:100780677 599.742