Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun9g03528 ATGGCTATCCGGGTTACCTTCTCCTTCTCTGGCTACGTGGCCCAGAATCTCGCGTCCTCCGCCGGCGTCCGCGTCGCCAATTCGCGATGCGTCCAAGAATGCTGGATCCGCACGCGCCTCTTCGGCGCCACCCAGAAAACGGAACTAGATTCTTCCGCCGGCGGAGTCCGAAATTTCTCCAGGCCCAACTGCTGGGCCCAGTCCACTTACTCCACCCTCGCCGGTGAGTTTCTCGGCGACGGCTTCAAGAGCCCAATCATCTTGGGCCTGATTTCAGTTATGAAGTCAACGGCGGGTGTGTCTGGGTCATCCGCGGCGGCTGCGGGTATTTTCGGTATTTCTCCCTTTAAAACAAATTCCATTATTCCCTTCTTGCCCGGTTCGAAGTGGCTTCCTTGCAACGAGTCCATTCCCGACGCCACCTCGTGGGAGGTCGATAAAGGTGGCACGAAACACACCGTTCCGAACGATGTTCCCGGTTTTGGAAAAACTAGTTGGCTTTCGCGGCTTTTGAACATGTCTTCTGAAGATGCGAAGGCTGCGTTCACTGCCATTACCGTTAGTTTGCTGTTTAAATCGTCTTTGGCTGAACCTAGATCCATTCCCTCCGCTTCTATGTATCCTACTCTTGAAGTGGGTGACCGTGTTTTAACCGAGAAGGTTTCGTTCCTCTTCAGGAAGCCCGATGTTTCGGATATAGTGATTTTTAAAGCGCCTCCTTCTTTGGAGGATTATGGTTTTACTTCGTCTGATGTATTTATAAAGAGGATTGTGGCTAAGGCAGGGGATTGTGTTGAGGTTCGAGATGGGAAACTACTGGTAAATGGTGTTGCTGAAGAACAGGAATTTGTATTAGAACCTCTAGCTTATGAGATGGATCCAATGGTTGTGCCAGAAGGATATGTGTTTGTAATGGGAGATAACCGGAATAACAGCCTTGATTCTCACAACTGGGGGCCCCTCCCAATCGAGAACATTGTTGGTAGATCCATGTTTAGGTACTGGCCTCCATCTAAGGTGTCTGACTCTGACACCCTTCGTAAACTGCCTCCTAAGAACAAATCTGTGGCAATTTCTTGA 1080 0.5009 MAIRVTFSFSGYVAQNLASSAGVRVANSRCVQECWIRTRLFGATQKTELDSSAGGVRNFSRPNCWAQSTYSTLAGEFLGDGFKSPIILGLISVMKSTAGVSGSSAAAAGIFGISPFKTNSIIPFLPGSKWLPCNESIPDATSWEVDKGGTKHTVPNDVPGFGKTSWLSRLLNMSSEDAKAAFTAITVSLLFKSSLAEPRSIPSASMYPTLEVGDRVLTEKVSFLFRKPDVSDIVIFKAPPSLEDYGFTSSDVFIKRIVAKAGDCVEVRDGKLLVNGVAEEQEFVLEPLAYEMDPMVVPEGYVFVMGDNRNNSLDSHNWGPLPIENIVGRSMFRYWPPSKVSDSDTLRKLPPKNKSVAIS 359
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun9g03528 359 MobiDBLite consensus disorder prediction 339 359 - -
Viun9g03528 359 ProSitePatterns Signal peptidases I serine active site. 203 210 IPR019756 GO:0004252|GO:0016020
Viun9g03528 359 PANTHER SIGNAL PEPTIDASE I 131 342 IPR000223 GO:0006508|GO:0008236|GO:0016020
Viun9g03528 359 SUPERFAMILY LexA/Signal peptidase 195 340 IPR036286 -
Viun9g03528 359 ProSitePatterns Signal peptidases I signature 3. 302 315 IPR019758 GO:0004252|GO:0016020
Viun9g03528 359 FunFam Peptidase/ serine-type peptidase 203 334 - -
Viun9g03528 359 Pfam Signal peptidase, peptidase S26 178 335 IPR019533 GO:0004252|GO:0006465
Viun9g03528 359 NCBIfam signal peptidase I 180 336 IPR000223 GO:0006508|GO:0008236|GO:0016020
Viun9g03528 359 CDD S26_SPase_I 197 329 IPR019533 GO:0004252|GO:0006465
Viun9g03528 359 Gene3D Umud Fragment, subunit A 191 348 - -
Viun9g03528 359 PRINTS Bacterial leader peptidase 1 (S26A) family signature 194 210 IPR000223 GO:0006508|GO:0008236|GO:0016020
Viun9g03528 359 PRINTS Bacterial leader peptidase 1 (S26A) family signature 297 316 IPR000223 GO:0006508|GO:0008236|GO:0016020
Viun9g03528 359 PRINTS Bacterial leader peptidase 1 (S26A) family signature 253 265 IPR000223 GO:0006508|GO:0008236|GO:0016020
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun9g03528 Viun-Chr9 41109326 41111816 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun9g03528 206 336 MADS-box Gene Family AT1G29960 33.835 3.14e-15 69.7
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun9g03528 K03100 - gmx:100817525 616.69
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Viun9g03528 9 41109326 41111816 Viun9g03528 9 41109326 41111816 ECH