Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun9g03524 ATGAGCAACGCCAACTGTAACAAGCCTTCTTCTCCCCAACCTACGATTAAACAACGTAGGCTCACTCGACAGGGGAGACTCCGATACCTCACTGACAAAGACGCTGCTCTGCATTCCACCACTTCTCTACCCGCTTCTCCTCTTCCCTCGTTTAAGTCCGGTTCCGCTTCTGACCATTGGTCTTCCTCTGCGGTTCCGCAACCGCTTCCGCGTCCCGACTCCCCGTTGACTCGTCGATACGATCATCATCAACTCGGATCGCCCCCTTTCGAACATCCTGGCTTCGCCTTTCGCAGGTCGGTGGATCATGATGCTGTGAGAAGTATAAGGTCTACCAGCAATTTGGGTAGACCTTCTTTTGATCCGGCGGCTTCAAATGCCAAACACGATTTAAGAGTGAACATTCCACCTGCAAGAGTGTTGGCAGGCAATACCAGTTCATGTAAAGATCACATAGAACACTCTCAAGATAATGACTCTGAAAATGTTTCCGACTTGAGATTGCATTTTTCGGCCAAGAGTGCCCCCAACAGTATATTCTCCAGCCCTGTTACTAGTCCCCGTAGATCCAGCAATGTAGATTTCTATGATCCTTCCATCATTTTTCATCAAGATTTTAATGACATTTTGAGAGTGTCACCGGCTAAAACTGCTCAGAGTCCAGACCGGACTCCTCTGCGCAGCCCAGGGAGCCTCCTCAATCCAGAGGGATGTCAGAGTCAGCTTCATAAACATAGCTCAAGAGTGTTGCCTGACAATAATCATGTTGATGCACATCCACTGCCTCTTCCTCCTAGAGCGTCACCACCGCCAGCACAGTCATCTCCCCAGCATCAACCAAGTATCGTGCACCTCACCGTAGATAATTCGCCTTCAATGAAAGGTCAATGGCAGAAAGGAAAACTTATAGGGCGGGGATCATATGGATCTGTTTATCACGCAACCAACTTAGAGACTGGAGCCTCGTGTGCAATGAAGGAGGTGGAAATGTTCCCCGATGATCCTAAATCTGCTGACTGCATAAAGCAACTTGAACAGGAAATTAGAATTCTCCGTCAATTACACCATCCCAACATTGTGCAGTACTATGGAAGTGAAGTAGATGGCGATCGACTGTACATATATATGGAGTATGTTCATCCTGGATCACTTGATAAGTTTATGCATGACCATTGTGGAGCTATGACAGAATCTGTAGTTCGCAACTTCACGAGGCATATTCTCTCTGGATTGGCATACTTGCATAGTACCAAGACCATTCACAGGGATATCAAAGGTGCAAACTTGTTGGTTGATGCAACGGGCATGGTTAAACTTGCGGATTTTGGGGTTTCAAAAATTCTGACAGAGAAATCGTATGAACTTTCATTGAAGGGTAGTCCCTACTGGATGGCTCCTGAGCTCATGAAGGCTGCCATAAAGAAAGAATCCAGTCCTGACGTTGCCATGGCCATTGATATATGGAGCTTAGGGTGCACTATCATCGAAATGCTGACAGGAAAACCTCCTTGGAGGGAATATGAAGGGCCGCAAGCCATGTTCAAGGTACTGCACAAATCCCCAAAAATACCTGAAAATTTGTCATCAGATGGACAGGATTTCCTTCAGCAGTGCTTCAGAAGGAATCCGGCAGATCGACCATCGGCAGCACTGCTTCTTACTCATGCTTTTGTACAAAATTTGCACGATCAAGATGCTCTACTTCATTCACAAGGGCAAAACTGTCCCAGAGGAGACCCTGGATCTGGAGATGATTCAAGTAGACATAGCCCCGCTCACAGTTCAAGAAGTAATAACCGTGTAGTGCCAGCCTCCATTGGCGCACGGTTTTTGCATAAAATTCAAAATTTAATAGGTGACACTTCGAAAAAATATGACAGCGAGGAATCTAATCATTCTTCTCGTAACTCTCCCTGCTCCATGACAGAAATAAACAGTCCTCAATCTAGTGCCCTCAATTACATGGCCAATTCCAGCAACATACCCCTCACCACCGTTATGAGAATCATCAGGCACATTTGA 2022 0.4629 MSNANCNKPSSPQPTIKQRRLTRQGRLRYLTDKDAALHSTTSLPASPLPSFKSGSASDHWSSSAVPQPLPRPDSPLTRRYDHHQLGSPPFEHPGFAFRRSVDHDAVRSIRSTSNLGRPSFDPAASNAKHDLRVNIPPARVLAGNTSSCKDHIEHSQDNDSENVSDLRLHFSAKSAPNSIFSSPVTSPRRSSNVDFYDPSIIFHQDFNDILRVSPAKTAQSPDRTPLRSPGSLLNPEGCQSQLHKHSSRVLPDNNHVDAHPLPLPPRASPPPAQSSPQHQPSIVHLTVDNSPSMKGQWQKGKLIGRGSYGSVYHATNLETGASCAMKEVEMFPDDPKSADCIKQLEQEIRILRQLHHPNIVQYYGSEVDGDRLYIYMEYVHPGSLDKFMHDHCGAMTESVVRNFTRHILSGLAYLHSTKTIHRDIKGANLLVDATGMVKLADFGVSKILTEKSYELSLKGSPYWMAPELMKAAIKKESSPDVAMAIDIWSLGCTIIEMLTGKPPWREYEGPQAMFKVLHKSPKIPENLSSDGQDFLQQCFRRNPADRPSAALLLTHAFVQNLHDQDALLHSQGQNCPRGDPGSGDDSSRHSPAHSSRSNNRVVPASIGARFLHKIQNLIGDTSKKYDSEESNHSSRNSPCSMTEINSPQSSALNYMANSSNIPLTTVMRIIRHI 673
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun9g03524 673 Pfam Protein kinase domain 298 557 IPR000719 GO:0004672|GO:0005524|GO:0006468
Viun9g03524 673 MobiDBLite consensus disorder prediction 1 20 - -
Viun9g03524 673 SUPERFAMILY Protein kinase-like (PK-like) 271 567 IPR011009 -
Viun9g03524 673 MobiDBLite consensus disorder prediction 213 247 - -
Viun9g03524 673 MobiDBLite consensus disorder prediction 569 602 - -
Viun9g03524 673 Gene3D Transferase(Phosphotransferase) domain 1 294 582 - -
Viun9g03524 673 SMART serkin_6 297 558 IPR000719 GO:0004672|GO:0005524|GO:0006468
Viun9g03524 673 ProSiteProfiles Protein kinase domain profile. 297 558 IPR000719 GO:0004672|GO:0005524|GO:0006468
Viun9g03524 673 MobiDBLite consensus disorder prediction 621 645 - -
Viun9g03524 673 MobiDBLite consensus disorder prediction 262 276 - -
Viun9g03524 673 MobiDBLite consensus disorder prediction 35 64 - -
Viun9g03524 673 ProSitePatterns Protein kinases ATP-binding region signature. 303 326 IPR017441 GO:0005524
Viun9g03524 673 FunFam Mitogen-activated protein kinase kinase kinase 5 294 597 - -
Viun9g03524 673 MobiDBLite consensus disorder prediction 213 279 - -
Viun9g03524 673 MobiDBLite consensus disorder prediction 1 95 - -
Viun9g03524 673 PANTHER MAP KINASE KINASE KINASE SSK2-RELATED-RELATED 79 584 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun9g03524 Viun-Chr9 41084640 41090082 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun9g03524 257 560 MAP Kinase Kinase Kinase AT5G66850 67.105 1.11e-148 446
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK STE_STE11 Viun9g03524 Pkinase 2.4e-67 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun9g03524 - - gmx:100781764 1072.38
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Viun9g03524 9 41084640 41090082 Viun9g03524 9 41084640 41090082 ECH