Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun9g03510 ATGCAACCAACATCCAACGGCTCTGATTCGCAAGCCACGGAGCAGAACCACCAGACGCCACCGCCGCCGCCGCCGCAGCCTGTGCCCGTCCCGCCGCAGTGGCTCCCGATGCAGTACCCAGCGGCTGCCATGGTAATGCAGCACCACATGATGCCGCCTCAGCATTATGCCGCGCCGCCGCCGCCTCCGCAGCCCTACGTCGCCTATCACCAGTACCAGCAGCAGCTCCCGCACGTGTCGCACGCGCACCATCAGGGATCCAGCGCCGAGAACAAGACCGTATGGGTCGGGGATTTGCATCACTGGATGGATGAAAATTATCTCCACCGCTGTTTCGCTACTACCGGCGAGATTTCCTCCATTAAGGTTATTCGAAATAAGCAGACTGGTCTATCAGAGGGTTATGGATTTGTGGAATTCTATTCGCATGGCACAGCTGAGAAAGTTTTGCAGACTTATGGTGCGATATTGATGCCCAACACAGAGCAACCTTTCCGCCTGAACTGGGCATCATTTAGCACAGGAGACAAGCGTTCAGATAATGTCCCTGATCTTTCTATTTTTGTAGGAGATTTAGCTGCTGATGTTACAGATAGCATGTTGCATGAAACTTTTTCTAATAGATACCCATCTGTTAAAGCTGCAAAAGTTGTTTTTGATGCCAATACTGGCCGTTCAAAGGGTTATGGTTTCGTCAGGTTTGGAGATGATAATGAGAGGTCTCAAGCTATGACTGAAATGAATGGAGTTTACTGCTCTAGCAGGCCTATGCGTATTGGTGCTGCAACTCCTAGGAAAACGTCTGGCTATCAACAAGGAAGTCAGTCAAATGGCACCTCAAACCAATCTGAAGCTGATTCGACGAACACAACTATATTTGTTGGAGGTCTTGACCCTAATGTCACTGCTGAAGATCTTAGGCAGCCATTCTCCCAGTATGGTGAGATAGTCTCTGTTAAGATCCCTGTTGGAAAAGGATGTGGTTTTGTACAATTTGCAAACAGAAATAATGCTGAAGAGGCATTGCAGAAGCTAAATGGGACAACTATTGGCAAGCAAATGGTTCGTCTTTCGTGGGGCCGCAATCCAGCAAATAAGCAGTTTAGAGGAGAATTGGGGAGTCCTTGGAGTGGGGCGTATTACGGAGGAACTGTTTATGATGGTTATGGGTATGCTTTACCAGCTCCTCATGACCCGAGTATCTATGCTGCTGCTTATGGGGCATACCCTATTTATGGAGGACATCAGCAGCAAGTAAGTTAA 1263 0.4885 MQPTSNGSDSQATEQNHQTPPPPPPQPVPVPPQWLPMQYPAAAMVMQHHMMPPQHYAAPPPPPQPYVAYHQYQQQLPHVSHAHHQGSSAENKTVWVGDLHHWMDENYLHRCFATTGEISSIKVIRNKQTGLSEGYGFVEFYSHGTAEKVLQTYGAILMPNTEQPFRLNWASFSTGDKRSDNVPDLSIFVGDLAADVTDSMLHETFSNRYPSVKAAKVVFDANTGRSKGYGFVRFGDDNERSQAMTEMNGVYCSSRPMRIGAATPRKTSGYQQGSQSNGTSNQSEADSTNTTIFVGGLDPNVTAEDLRQPFSQYGEIVSVKIPVGKGCGFVQFANRNNAEEALQKLNGTTIGKQMVRLSWGRNPANKQFRGELGSPWSGAYYGGTVYDGYGYALPAPHDPSIYAAAYGAYPIYGGHQQQVS 420
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun9g03510 420 Gene3D - 275 392 IPR012677 -
Viun9g03510 420 SMART rrm1_1 186 260 IPR000504 GO:0003723
Viun9g03510 420 SMART rrm1_1 93 168 IPR000504 GO:0003723
Viun9g03510 420 SMART rrm1_1 291 358 IPR000504 GO:0003723
Viun9g03510 420 Gene3D - 173 274 IPR012677 -
Viun9g03510 420 CDD RRM3_NGR1_NAM8_like 289 360 - -
Viun9g03510 420 MobiDBLite consensus disorder prediction 265 293 - -
Viun9g03510 420 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 292 353 IPR000504 GO:0003723
Viun9g03510 420 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 94 155 IPR000504 GO:0003723
Viun9g03510 420 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 187 256 IPR000504 GO:0003723
Viun9g03510 420 FunFam Polyadenylate-binding protein RBP47B 91 171 - -
Viun9g03510 420 SUPERFAMILY RNA-binding domain, RBD 279 390 IPR035979 GO:0003676
Viun9g03510 420 MobiDBLite consensus disorder prediction 1 34 - -
Viun9g03510 420 Gene3D - 91 171 IPR012677 -
Viun9g03510 420 SUPERFAMILY RNA-binding domain, RBD 64 153 IPR035979 GO:0003676
Viun9g03510 420 CDD RRM2_SECp43_like 184 263 - -
Viun9g03510 420 CDD RRM1_SECp43_like 93 173 - -
Viun9g03510 420 FunFam Polyadenylate-binding protein RBP47 275 392 - -
Viun9g03510 420 MobiDBLite consensus disorder prediction 1 16 - -
Viun9g03510 420 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 185 264 IPR000504 GO:0003723
Viun9g03510 420 FunFam Polyadenylate-binding protein RBP47C isoform A 184 260 - -
Viun9g03510 420 SUPERFAMILY RNA-binding domain, RBD 167 279 IPR035979 GO:0003676
Viun9g03510 420 PANTHER TRNA SELENOCYSTEINE 1-ASSOCIATED PROTEIN 1-RELATED-RELATED 83 366 - -
Viun9g03510 420 MobiDBLite consensus disorder prediction 261 293 - -
Viun9g03510 420 MobiDBLite consensus disorder prediction 17 34 - -
Viun9g03510 420 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 92 172 IPR000504 GO:0003723
Viun9g03510 420 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 290 362 IPR000504 GO:0003723
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun9g03510 Viun-Chr9 41014055 41018126 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun9g03510 94 369 Eukaryotic Initiation Factors Gene Family AT4G34110 27.915 1.22e-27 113
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun9g03510 - - gmx:100777830 700.279