Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun9g03501 ATGGTGGCAGCATGCGCATACGAGGAGAGTCGTCGTAAGAGAGTAGAGGAGAACAGAAAGAGAATGGAAGCTCTCAATCTCCCTCTCCTCTCTCGAGCTCTTCACAAATCCCCTCCTCCCAAATCTTCTCCGTTAAAATCATCCAAGAAAAGCAACACCACCCAAAAAGTGTTGGTTGCAGTGAGAAGATCCGGTCGCCTGGCGAACTTGCCTTCCCCTGTTTACAAAGAAATTCCTATTGATCGTGTCTCTATACCTCGAAGAAATACTAGCAATAGGCACAGAGACCTTAGTAATAGAGTATACGCCTCAGATGAAGCCAGGCTGGAAGCATCAGAACAAGCAGAAAAATTAATGTCGGGTTTAAAATCTGATTTCCCAAGCTTCATAAAATCTATGCTCCAATCTCATGTCAGTGGAGGGTTTTGGCTGGGCCTTCCAGTTCAATTTTGCAAGAGCAATCTTCCAAAAGGAGACGATGTGATGACTTTGGTTGATGAAGACGGGAATGAGTATTCAACAATATATTTGCAACGTAAATCAGGACTTAGTGGGGGATGGAAAGCTTTTGCAGTTGCTCATGACCTAGCTGATGGGGACGCTTTAATTTTCCAATTAATCAAGCGCACTACATTCAAGGTGTACATTATTAGAGCGAATAGTCCTTCAGAGGATAAACAAGTCGAGTGA 690 0.4362 MVAACAYEESRRKRVEENRKRMEALNLPLLSRALHKSPPPKSSPLKSSKKSNTTQKVLVAVRRSGRLANLPSPVYKEIPIDRVSIPRRNTSNRHRDLSNRVYASDEARLEASEQAEKLMSGLKSDFPSFIKSMLQSHVSGGFWLGLPVQFCKSNLPKGDDVMTLVDEDGNEYSTIYLQRKSGLSGGWKAFAVAHDLADGDALIFQLIKRTTFKVYIIRANSPSEDKQVE 229
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun9g03501 229 SMART B3_2 129 220 IPR003340 GO:0003677
Viun9g03501 229 Gene3D - 105 221 IPR015300 -
Viun9g03501 229 MobiDBLite consensus disorder prediction 7 23 - -
Viun9g03501 229 MobiDBLite consensus disorder prediction 41 55 - -
Viun9g03501 229 SUPERFAMILY DNA-binding pseudobarrel domain 123 220 IPR015300 -
Viun9g03501 229 CDD B3_DNA 127 218 IPR003340 GO:0003677
Viun9g03501 229 PANTHER B3 DOMAIN-CONTAINING PROTEIN OS11G0197600-RELATED 48 222 IPR044837 -
Viun9g03501 229 Pfam B3 DNA binding domain 129 219 IPR003340 GO:0003677
Viun9g03501 229 ProSiteProfiles B3 DNA-binding domain profile. 129 220 IPR003340 GO:0003677
Viun9g03501 229 MobiDBLite consensus disorder prediction 1 55 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun9g03501 Viun-Chr9 40965380 40969104 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun9g03501 73 224 B3 DNA Binding Superfamily AT5G42700 62.500 5.53e-67 203
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3 Viun9g03501 B3 1.8e-16 CL0405
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun9g03501 - - gmx:100797091 343.199