Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun9g03478 ATGGTGGCAGTAGCAGTAGGAAGAGGCCTTCCTATTCAAACACGCTCTTTATTCAACAGTAAGAGCATATATAGAGCTTCACCAGCAGGAAGAGTCTCGTGGCTTGGGCATTCTGCTGCTGCCACTCCACGTCATAGAAAAACTTGCGTAGCAGCGCAACAGCGACCTACATGGCTCCCAGGACTTGATCCCCCACCTTATCTTGATGGAACTCTGGCTGGAGATTTTGGATTTGACCCACTTGGGCTTGGAGAGGATCCTGATACCTTAAGGTGGTATGTGCAGGCAGAGCTGGTTCATTCCCGTTTTGCAATGCTTGGGGTATTGGGAATTCTTGTGACAGATCTGCTTCGCGTCACAGGAGTTAGTAAGATACCGGTTTGGTTTGAAGCTGGTGCAGTAAAATACGACCTTGCCAATACACAGACACTCTTCATTGTTCAACTACTTCTGATGGGGTTTGCCGAAACAAAAAGGTACATGGATTTTGTTAGTCCTGGATCTCAAGCTAAAGAGGGGTCCTTCTTTGGACTAGAAGCTTCACTGGAAGGATTAGAGCCAGGGTACCCAGGGGGTCCTCTGCTAAATCCTCTTGGCCTAGCTAAAGACATTAAAAACGCTCATGATTCGAAGCTTAAAGAGATTAAAAATGGTCGACTTGCAATGGTGGCAATGGTTGGTTTCTTTGTACAAGCTTCGGTGACTCACGTTGGACCAATTGAGAACCTTGTGGAGCATCTTTCCAATCCATGGCATAAAACTATTATTCAGACCATTGCGAATTCTAGTTCTTAG 795 0.4604 MVAVAVGRGLPIQTRSLFNSKSIYRASPAGRVSWLGHSAAATPRHRKTCVAAQQRPTWLPGLDPPPYLDGTLAGDFGFDPLGLGEDPDTLRWYVQAELVHSRFAMLGVLGILVTDLLRVTGVSKIPVWFEAGAVKYDLANTQTLFIVQLLLMGFAETKRYMDFVSPGSQAKEGSFFGLEASLEGLEPGYPGGPLLNPLGLAKDIKNAHDSKLKEIKNGRLAMVAMVGFFVQASVTHVGPIENLVEHLSNPWHKTIIQTIANSSS 264
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun9g03478 264 Gene3D Chlorophyll a/b binding protein domain 57 264 - -
Viun9g03478 264 PANTHER CHLOROPHYLL A/B BINDING PROTEIN 30 261 IPR001344 GO:0009765|GO:0016020
Viun9g03478 264 SUPERFAMILY Chlorophyll a-b binding protein 49 261 - -
Viun9g03478 264 FunFam Chlorophyll a-b binding protein, chloroplastic 56 263 - -
Viun9g03478 264 Pfam Chlorophyll A-B binding protein 64 232 IPR022796 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun9g03478 Viun-Chr9 40907607 40909231 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun9g03478 39 256 Chloroplast and Mitochondria Gene Families AT3G61470 45.909 4.93e-61 191
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun9g03478 K08911 - gmx:100804934 430.639
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Viun9g03478 9 40907607 40909231 Viun9g03478 9 40907607 40909231 ECH