Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun9g03458 ATGTCTGTTATCCCAAAACACACTCACTCTTTAGAAGAACTAAACCCTGAGAAGGAGAGTTGGAATATCCTTGCAAGAGTTGTAAGGTTATGGTTTGTTGAAGATTACACAAAAGGAAAAACTCCATTTTCCATGGAAATTGTTCTTCAAGACCAAGAGGGTGTACTAATCCATGCATCTGTTAGACGCACATTGATATACAAATTCCAGTCTGAAATCAAAGAGGACAAGGTTTACAACATCCAATCTTTCAGTGTTTCATGTAATGGTGGTTCTTATAGAACCACAAAACATGCCTATAAGATCAACTTCCAATTTGGAACCAAGGTCAATATGGTGCAAAGTACCTTAGTTCCGAAAACTACAACTTCATACACCCCTTTTTCAACCATCATAGCTGATGGTTTTGACACAGATTACTTAGTTAATGTGATTGGGATGTTTACTGCTGTTGGAACAGAGAGGGAGCTAGAGAAAGCTGGTAAGAAAACCAAAATGAATGTCATCCTTATTGAAGCTGATGGTTTGCAACTGGAGTGTACTTTATTTGGTCAATATGTTGATATGTTAAATGCATTTCTGGCCTCTGGAGAGGATCAACATGTTGTCATTGCTTTGCATTATTGCAAAGTGAAGACCTTCCAAGATAAAGTTTCTATTCAAAACTGTATGAACTGTACCAAGATTATCTTTAACTGTGATGGTGAAGATGCAACCAAGTTGAAAAAAATGATGTGGGATAATACTGAATCTCCTTCTCAAGCTCTTACCCAACTTTCTGCTTCTTCTAAAGTTAGCTTAGAAGATGATTTCATTAAGCTGCATCCTAGGAGTTCAATTGAAGGTCTAAAAGATTTTAAGCAGGAAAGTACTTTTGTAGTAAAAGCTACTATCAAACATGTGCTAGATCATGATGATTGGTGGTATACAGCATGTATCTGCAACAAAGCAGTTTATCCTGATTCCAAAATGTTTAAACTGAAACTTCGTGTAATTGATGCTACGGATTCTACAACTTTTGTTGTATTTCATCGTGATGCAAGTGCAATGTTGAAGAAATCATGCTCTGACATTCTTGAATTGCAAGACAAGGTTAAGTTTTTAATCTAA 1110 0.3613 MSVIPKHTHSLEELNPEKESWNILARVVRLWFVEDYTKGKTPFSMEIVLQDQEGVLIHASVRRTLIYKFQSEIKEDKVYNIQSFSVSCNGGSYRTTKHAYKINFQFGTKVNMVQSTLVPKTTTSYTPFSTIIADGFDTDYLVNVIGMFTAVGTERELEKAGKKTKMNVILIEADGLQLECTLFGQYVDMLNAFLASGEDQHVVIALHYCKVKTFQDKVSIQNCMNCTKIIFNCDGEDATKLKKMMWDNTESPSQALTQLSASSKVSLEDDFIKLHPRSSIEGLKDFKQESTFVVKATIKHVLDHDDWWYTACICNKAVYPDSKMFKLKLRVIDATDSTTFVVFHRDASAMLKKSCSDILELQDKVKFLI 369
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun9g03458 369 PANTHER OS03G0429900 PROTEIN 10 353 IPR004591 GO:0003677|GO:0005634|GO:0006260|GO:0006281|GO:0006310
Viun9g03458 369 CDD RPA1_DBD_A_like 26 110 - -
Viun9g03458 369 Gene3D - 6 112 IPR012340 -
Viun9g03458 369 SUPERFAMILY Nucleic acid-binding proteins 281 363 IPR012340 -
Viun9g03458 369 Pfam Domain of unknown function DUF223 46 141 IPR003871 -
Viun9g03458 369 Gene3D - 118 254 IPR012340 -
Viun9g03458 369 Gene3D - 272 367 IPR012340 -
Viun9g03458 369 SUPERFAMILY Nucleic acid-binding proteins 9 112 IPR012340 -
Viun9g03458 369 SUPERFAMILY Nucleic acid-binding proteins 124 246 IPR012340 -
Viun9g03458 369 CDD RPA1_DBD_B_like 143 237 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun9g03458 Viun-Chr9 40783179 40784965 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun9g03458 6 362 Core DNA Replication Machinery Family AT5G08020 21.594 6.07e-15 74.3
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun9g03458 - - vun:114180582 647.506