Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun9g03441 ATGCCCAACACAAACCATCCCTTCTTCCCATTACTGTTCCTGATTCTGCTCCTGCTCCTCCACGCTTCTTCCTACGCACATTCCTCCCAACTCCAACGTCGTCATATTCCGCCGTTAGTGTTCACAGACGCCCACGCCCTCCTCGCCTTCAAACTTAAAGCCGACGTAAACGATCACCTTGACTTCTCCCCCCTCACGCGCGGCCTCCGCTTCTGCACGTGGCAGGGCGTCCAATGCAACGGCCCCAAAGTAGAGCGTCTCCTTCTCCAGGGCTTAGATCTCGGCGGCGTTTGGGCTCCAAACACACTCACGCGTCTCGACCAGCTCCGAGTCCTCAGTTTACAGAACAACTCACTCACGGGAACCATCCCGGACCTCACCGCTCTCTTCAATCTCAAAAGCATCTTCCTCGACAACAACCAATTCACCGGTTCTCTCCCTCCCTCGCTCTTCTCTCTCCACCGTCTACGCAACTTGGATTTCTCTCACAACAATCTCTCTGGACCTATCTCTGCTGCGTTCACTAACCTAGACCGTCTTCACACACTCCGTCTTAGTTATAATGCTTTTAGCGGTTCGATCCCTCCGTTTAACCAGTCCTCTCTTAGAATACTTGAAATCTCCCGCAACAACCTCTCCGGCGCGATTCCGGTGACGCCGACGCTATTTCGTTTTCCGCCGTCTTCCTTCGCGTTCAACCCTAACCTCTGCGGCGAAATCATCCGCGTGCAATGCCGCCCTGCGCAGCCTTTCTTCGGGCCCGCGGGGCCACCTAAGACGCCGCTCGGTCAGAGCGCGCAGGTGCACGGCGTCAGTGGCTTAATCCGACAGCCGTACGAGAAGAAGCGGCGCGACCGGCGGGCGGTGATAATCGGATTCTCCGCCGGCGTGTTCGTTCTAGTTTGTTCGCTGGTGTGCTTCGCGGCGGCGGTGAGGAAGCAGAGGAGCCGATGCAAGAAGGACCAGCGGTGCGGGATGATGGCGGCGGATGCGGAGGCAGCGGCGGTGATGCGGATGGAGATGGAAAGAGAGTTGGAAGAGAAGGTGAAGAGAGCGGAGGTGGCGAAGAGTGGAAGTTTGGTATTCTGTGCGGGTGAGGCGCAGGTGTATACGCTGGACCAGTTGATGAAGGGTTCCGCGGAGCTTTTAGGGAGAGGGTGTTTGGGAACCACTTACAAGGCGGCACTTGATAACCGTCTGATGGTGACGGTGAAGCGCCTTGATGCGGGGAAAATGGCTTCCCATGCAACGAAGGAAGTGTTCGAGCGACACATGGAATCCGTGGGTGCGCTTCGACACCCCAATTTGGTTCCTCTCAGGGCCTATTTCCAGGCCAAGCAAGAGAGGCTCATTATCTATGACTTTCAGCCCAACGGCAGTCTCTTCTCCCTCATACACGGATCGAGATCAAGCAGGGCAAGGCCATTACACTGGACATCATGCTTGAAAATAGCAGAGGACGTAGCACAAGGTCTGGCCTTCATCCACCAGGCATGGAGACTGGTCCATGGCAATCTCAAGTCCTCCAATGTCCTTCTTGGACCTGATTTCGAGGCATGCATCACAGATTACTGCCTCTCCGTGTTGACACATCCATCCACATTTGATGAAGATGGCGATTCAGCAGCGTACAGAGCTCCAGAGACTCGCAACCCCAATCATCAGCCAACCCACAAATCCGATGTTTATGCGTATGGCGTTTTGTTGCTTGAGCTTCTGACTGGGAAATTTCCAGCGGAGCTTCCATTTATGGTTCCTGGTGACATGTCAAGTTGGGTGAGGTCCATCAGGGATGACAATGGGGGCGAAGATAGCAGAATGGACATGCTTCTTCAGGTGGCTACAACTTGTAGCTTGACCTCACCGGAGCAGAGACCAACTATGTGGCAGGTCTTGAAGATGTTGCAGGAAATCAAAGAGATTGTACTATTGGAGGATAGCAGTGAATTGGAACTGCGCATTGGTGATGATGCCATGCCTTAG 1983 0.5441 MPNTNHPFFPLLFLILLLLLHASSYAHSSQLQRRHIPPLVFTDAHALLAFKLKADVNDHLDFSPLTRGLRFCTWQGVQCNGPKVERLLLQGLDLGGVWAPNTLTRLDQLRVLSLQNNSLTGTIPDLTALFNLKSIFLDNNQFTGSLPPSLFSLHRLRNLDFSHNNLSGPISAAFTNLDRLHTLRLSYNAFSGSIPPFNQSSLRILEISRNNLSGAIPVTPTLFRFPPSSFAFNPNLCGEIIRVQCRPAQPFFGPAGPPKTPLGQSAQVHGVSGLIRQPYEKKRRDRRAVIIGFSAGVFVLVCSLVCFAAAVRKQRSRCKKDQRCGMMAADAEAAAVMRMEMERELEEKVKRAEVAKSGSLVFCAGEAQVYTLDQLMKGSAELLGRGCLGTTYKAALDNRLMVTVKRLDAGKMASHATKEVFERHMESVGALRHPNLVPLRAYFQAKQERLIIYDFQPNGSLFSLIHGSRSSRARPLHWTSCLKIAEDVAQGLAFIHQAWRLVHGNLKSSNVLLGPDFEACITDYCLSVLTHPSTFDEDGDSAAYRAPETRNPNHQPTHKSDVYAYGVLLLELLTGKFPAELPFMVPGDMSSWVRSIRDDNGGEDSRMDMLLQVATTCSLTSPEQRPTMWQVLKMLQEIKEIVLLEDSSELELRIGDDAMP 660
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun9g03441 660 Gene3D Phosphorylase Kinase; domain 1 333 455 - -
Viun9g03441 660 SUPERFAMILY L domain-like 42 219 - -
Viun9g03441 660 SUPERFAMILY Protein kinase-like (PK-like) 381 640 IPR011009 -
Viun9g03441 660 Pfam Leucine rich repeat 131 189 IPR001611 GO:0005515
Viun9g03441 660 PANTHER LEUCINE-RICH REPEAT RECEPTOR-LIKE PROTEIN KINASE PXC1 16 639 IPR046959 -
Viun9g03441 660 Pfam Protein tyrosine and serine/threonine kinase 381 635 IPR001245 GO:0004672|GO:0006468
Viun9g03441 660 Gene3D Transferase(Phosphotransferase) domain 1 457 650 - -
Viun9g03441 660 ProSiteProfiles Protein kinase domain profile. 377 643 IPR000719 GO:0004672|GO:0005524|GO:0006468
Viun9g03441 660 Gene3D Ribonuclease Inhibitor 42 152 IPR032675 -
Viun9g03441 660 Gene3D Ribonuclease Inhibitor 153 238 IPR032675 -
Viun9g03441 660 FunFam Nuclear pore complex protein NUP107 40 196 - -
Viun9g03441 660 ProSiteProfiles Leucine-rich repeat profile. 108 130 IPR001611 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun9g03441 Viun-Chr9 40636991 40640798 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun9g03441 8 646 Receptor kinase-like Gene Family AT5G43020 53.593 0.0 664
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-III Viun9g03441 Pkinase 2.6e-29 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun9g03441 - - var:108341030 1200.27