LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Viun9g03413	ATGGAGACGCGTGCAGCTGCAAAGAGAAAGGCAACCGCTGCTGCTCCCATGGTAGTGGTCGAAAAACAACATCCCAAAAGGCAGCGTGTTGTGCTGGGTGAACTTTCAAATCTTCCGACTGCAACTCAAAATCAACGCAAACAGAAACTGCAATGTAGGAAGAATCCGAATTTGAAGAAACCATCTCCCACAGAGTCCATTCCCTCTTCTTCCCAGATTGATCAACCTTATGTTTCCGACATCTATGAGTATCTTCATGATATGGAGAGGAAGAGGAGACCAATGGTTGATTACATTGAAAAAGTTCAGAGAGAAGTTACTGTAATCATGAGGGCAATATTGGTGGATTGGCTAGTGGAGGTAGCTGAAGAGTACAAGCTTCACTCCGATACCCTTCATCTCTCTGTTTCATACATAGATAGATTTTTATCAGTGAATCCTGTTAGCAAGTCAAAACTTCAATTACTGGGTGTTTCTTCCATGCTAATTGCTGCAAAGTACGAGGAAGTTGACCCACCGCGTGTTGTTGCTTTTTGCAACATTACTGATAACACATACCACAAGAAAGAGGTTGTAAAGATGGAAGCTGACATACTCAAGTCTCTAAAGTTTGAGATGGGAAATCCTACTGTGAATACCTTTCTAAGGAGGTTTATTAATGTTGCTTGTGATAACCAAAAGGCTTCAAATTTACAGTTTGAATTTCTAAGCTGCTATCTTGCAGACCTAAGTTTGTTGGACTATGATTGCTTGAAAATTTTGCCTTCCATTGTGGCAGCTTCAGCTGTATTTCTTGCCAGGTTTATCATTGCTCCTGAAGTCCATCCTTGGAGTTCTTCATTGTCTGGATGTTCTGGTTACCAACCAGTTGAACTGAAAGAGTGTGTCCTCATCTTGCATGACTTGTATTTTTCAAGAAAGGCAGCGTCTTTCAAAGCTGTTAGGGAGAAATACAAGCACCACAAGTTCAAGTTTGTAGCAAGATTGCCTTCTCCTCCGCATATACCAAGACATTACTTTGAAACTCAGTGA	1032	0.4128	METRAAAKRKATAAAPMVVVEKQHPKRQRVVLGELSNLPTATQNQRKQKLQCRKNPNLKKPSPTESIPSSSQIDQPYVSDIYEYLHDMERKRRPMVDYIEKVQREVTVIMRAILVDWLVEVAEEYKLHSDTLHLSVSYIDRFLSVNPVSKSKLQLLGVSSMLIAAKYEEVDPPRVVAFCNITDNTYHKKEVVKMEADILKSLKFEMGNPTVNTFLRRFINVACDNQKASNLQFEFLSCYLADLSLLDYDCLKILPSIVAASAVFLARFIIAPEVHPWSSSLSGCSGYQPVELKECVLILHDLYFSRKAASFKAVREKYKHHKFKFVARLPSPPHIPRHYFETQ	343

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Viun9g03413	343	MobiDBLite	consensus disorder prediction	35	72	-	-
	Viun9g03413	343	MobiDBLite	consensus disorder prediction	1	20	-	-
	Viun9g03413	343	Pfam	Cyclin, C-terminal domain	209	331	IPR004367	-
	Viun9g03413	343	FunFam	G2/mitotic-specific cyclin	94	205	-	-
	Viun9g03413	343	SMART	cyclin_7	116	200	IPR013763	-
	Viun9g03413	343	SMART	cyclin_7	213	301	IPR013763	-
	Viun9g03413	343	FunFam	Cyclin superfamily protein, putative	206	278	-	-
	Viun9g03413	343	CDD	CYCLIN_AtCycA-like_rpt2	209	323	-	-
	Viun9g03413	343	Gene3D	-	80	328	-	-
	Viun9g03413	343	PIRSF	Cyclin_A_B_D_E	2	340	IPR046965	GO:0016538\|GO:0044772
	Viun9g03413	343	SMART	Cyclin_C_2	209	332	IPR004367	-
	Viun9g03413	343	SUPERFAMILY	Cyclin-like	72	206	IPR036915	-
	Viun9g03413	343	Pfam	Cyclin, N-terminal domain	80	206	IPR006671	-
	Viun9g03413	343	SUPERFAMILY	Cyclin-like	209	334	IPR036915	-
	Viun9g03413	343	MobiDBLite	consensus disorder prediction	30	72	-	-
	Viun9g03413	343	PANTHER	CYCLINS	59	320	IPR039361	-
	Viun9g03413	343	ProSitePatterns	Cyclins signature.	111	142	IPR006671	-
	Viun9g03413	343	Gene3D	-	94	207	-	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Viun9g03413	Viun-Chr9	40469374	40471997	Dispersed/Tandem

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Viun9g03413	3	341	Core Cell Cycle Gene Families	AT5G43080	55.685	4.36e-130	374

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Viun9g03413	K06627		-	gmx:100787417	538.495